WormBase Tree Display for Gene: WBGene00011567
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| WBGene00011567 | SMap | S_parent | Sequence | T07C5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | nhr-215 | Person_evidence | WBPerson600 | ||||||
| Sequence_name | T07C5.4 | |||||||||
| Molecular_name | T07C5.4 | |||||||||
| Other_name | CELE_T07C5.4 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | nhr-215 | |||||||||
| DB_info | Database | AceView | gene | XN316 | ||||||
| WormQTL | gene | WBGene00011567 | ||||||||
| WormFlux | gene | WBGene00011567 | ||||||||
| NDB | locus_tag | CELE_T07C5.4 | ||||||||
| NCBI | gene | 188211 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | |||
| 2 | 22 Jul 2005 10:29:12 | WBPerson2970 | Name_change | CGC_name | nhr-215 | |||||
| 3 | 19 Apr 2016 10:52:22 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | nhr | |||||||||
| Allele (34) | ||||||||||
| Strain | WBStrain00036657 | |||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00064501 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| WBGene00061007 | Caenorhabditis remanei | From_analysis | OMA | |||||||
| WBGene00159915 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
| WBGene00051157 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| Paralog (24) | ||||||||||
| Structured_description | Automated_description | Enriched in AFD; ASER; PLM; and neurons based on RNA-seq and microarray studies. Is affected by several genes including eat-2; clk-1; and alg-1 based on tiling array; microarray; and RNA-seq studies. Is affected by five chemicals including methylmercuric chloride; metformin; and Sirolimus based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | T07C5.4:wp253 | ||||||||
| Corresponding_pseudogene | T07C5.4 | |||||||||
| Associated_feature | WBsf978853 | |||||||||
| Transcription_factor | WBTranscriptionFactor000913 | |||||||||
| Experimental_info | Expr_pattern | Expr1011640 | ||||||||
| Expr1156346 | ||||||||||
| Microarray_results (18) | ||||||||||
| Expression_cluster (42) | ||||||||||
| Interaction (133) | ||||||||||
| Map_info | Map | X | Position | 7.95034 | Error | 0.020201 | ||||
| Positive | Positive_clone | T07C5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
