WormBase Tree Display for Gene: WBGene00011520
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| WBGene00011520 | SMap | S_parent | Sequence | T06C12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nhr-213 | Person_evidence | WBPerson600 | |||||
| Sequence_name | T06C12.13 | ||||||||
| Molecular_name | T06C12.13a | ||||||||
| T06C12.13a.1 | |||||||||
| CE16363 | |||||||||
| T06C12.13b | |||||||||
| CE48092 | |||||||||
| T06C12.13b.1 | |||||||||
| Other_name | CELE_T06C12.13 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-213 | ||||||||
| DB_info | Database | AceView | gene | 5Q374 | |||||
| WormQTL | gene | WBGene00011520 | |||||||
| WormFlux | gene | WBGene00011520 | |||||||
| NDB | locus_tag | CELE_T06C12.13 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011520|UniProtKB=O18048 | |||||||
| family | PTHR45680 | ||||||||
| NCBI | gene | 188172 | |||||||
| RefSeq | protein | NM_001276974.4 | |||||||
| NM_074573.2 | |||||||||
| SwissProt | UniProtAcc | O18048 | |||||||
| TrEMBL | UniProtAcc | L8E924 | |||||||
| UniProt_GCRP | UniProtAcc | O18048 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 22 Jul 2005 10:29:12 | WBPerson2970 | Name_change | CGC_name | nhr-213 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (71) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00024225 | ||||||||
| 00024226 | |||||||||
| 00024227 | |||||||||
| 00031344 | |||||||||
| 00118763 | |||||||||
| 00118764 | |||||||||
| 00118765 | |||||||||
| 00118766 | |||||||||
| Ortholog (18) | |||||||||
| Paralog (217) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in several structures, including excretory system; intestine; pharynx; somatic nervous system; and vulva. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T06C12.13a | |||||||
| T06C12.13b | |||||||||
| Corresponding_transcript | T06C12.13a.1 | ||||||||
| T06C12.13b.1 | |||||||||
| Other_sequence | EV853396.1 | ||||||||
| EX558399.1 | |||||||||
| ACC01226_1 | |||||||||
| Dviv_isotig27161 | |||||||||
| Acan_isotig11530 | |||||||||
| DVC00231_1 | |||||||||
| Dviv_isotig19447 | |||||||||
| Associated_feature | WBsf978542 | ||||||||
| WBsf235098 | |||||||||
| WBsf235099 | |||||||||
| WBsf235100 | |||||||||
| Transcription_factor | WBTranscriptionFactor001052 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00018279 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00035254 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052624 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7652 | ||||||||
| Expr1022344 | |||||||||
| Expr1035074 | |||||||||
| Expr1156229 | |||||||||
| Expr2014117 | |||||||||
| Expr2032356 | |||||||||
| Drives_construct | WBCnstr00012797 | ||||||||
| WBCnstr00030592 | |||||||||
| Construct_product | WBCnstr00030592 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (144) | |||||||||
| Interaction | WBInteraction000031291 | ||||||||
| WBInteraction000530004 | |||||||||
| Map_info | Map | V | Position | 9.11765 | Error | 0.004357 | |||
| Positive | Positive_clone | T06C12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5592 | |||||||
| 4905 | |||||||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
