WormBase Tree Display for Gene: WBGene00011479
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| WBGene00011479 | SMap | S_parent | Sequence | T05E11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clc-9 | Person_evidence | WBPerson260 | |||||
| Sequence_name | T05E11.2 | ||||||||
| Molecular_name | T05E11.2a | ||||||||
| T05E11.2a.1 | |||||||||
| CE49841 | |||||||||
| T05E11.2b | |||||||||
| CE42664 | |||||||||
| T05E11.2b.1 | |||||||||
| Other_name | CELE_T05E11.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | clc-9 | ||||||||
| DB_info | Database | AceView | gene | 4L879 | |||||
| WormQTL | gene | WBGene00011479 | |||||||
| WormFlux | gene | WBGene00011479 | |||||||
| NDB | locus_tag | CELE_T05E11.2 | |||||||
| NCBI | gene | 188130 | |||||||
| RefSeq | protein | NM_001136395.2 | |||||||
| NM_069677.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF316602 | |||||||
| TrEMBL | UniProtAcc | B3GWC2 | |||||||
| Q22234 | |||||||||
| UniProt_GCRP | UniProtAcc | B3GWC2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 19 Apr 2021 01:27:01 | WBPerson1983 | Name_change | CGC_name | clc-9 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clc | ||||||||
| Allele (46) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00005972 | ||||||||
| 00005973 | |||||||||
| 00005974 | |||||||||
| 00118727 | |||||||||
| Ortholog (22) | |||||||||
| Structured_description | Concise_description | T05E11.2 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia; T05E11.2 is worm-specific, with a with highly divergent sequence lacking obvious homologs; T05E11.2 has no obvious function in mass RNAi assays; claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. | Paper_evidence | WBPaper00004961 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00005946 | |||||||||
| WBPaper00005975 | |||||||||
| WBPaper00012856 | |||||||||
| WBPaper00018356 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be located in plasma membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T05E11.2a | |||||||
| T05E11.2b | |||||||||
| Corresponding_CDS_history | T05E11.2:wp109 | ||||||||
| T05E11.2a:wp243 | |||||||||
| Corresponding_transcript | T05E11.2a.1 | ||||||||
| T05E11.2b.1 | |||||||||
| Associated_feature | WBsf660675 | ||||||||
| WBsf660676 | |||||||||
| WBsf997767 | |||||||||
| WBsf997768 | |||||||||
| WBsf022657 | |||||||||
| WBsf229095 | |||||||||
| WBsf229096 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00052510 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00035202 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018230 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024876 | ||||||||
| Expr1156135 | |||||||||
| Expr2005881 | |||||||||
| Expr2024097 | |||||||||
| Drives_construct | WBCnstr00030623 | ||||||||
| Construct_product | WBCnstr00030623 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (126) | |||||||||
| Interaction | WBInteraction000221377 | ||||||||
| Map_info | Positive | Positive_clone | T05E11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | 4.88115 | |||||||
| Reference | WBPaper00031003 | ||||||||
| WBPaper00053423 | |||||||||
| Method | Gene |
