WormBase Tree Display for Gene: WBGene00011408
expand all nodes | collapse all nodes | view schema
| WBGene00011408 | SMap | S_parent | Sequence | T04A8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nifk-1 | Person_evidence | WBPerson260 | |||||
| Sequence_name | T04A8.6 | ||||||||
| Molecular_name | T04A8.6 | ||||||||
| T04A8.6.1 | |||||||||
| CE01075 | |||||||||
| Other_name | CELE_T04A8.6 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | nifk-1 | ||||||||
| DB_info | Database | AceView | gene | 3F782 | |||||
| WormQTL | gene | WBGene00011408 | |||||||
| WormFlux | gene | WBGene00011408 | |||||||
| NDB | locus_tag | CELE_T04A8.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011408|UniProtKB=Q22135 | |||||||
| family | PTHR46754 | ||||||||
| NCBI | gene | 175614 | |||||||
| RefSeq | protein | NM_065558.7 | |||||||
| TREEFAM | TREEFAM_ID | TF315137 | |||||||
| TrEMBL | UniProtAcc | Q22135 | |||||||
| UniProt_GCRP | UniProtAcc | Q22135 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 07 Dec 2017 13:24:47 | WBPerson1983 | Name_change | CGC_name | nifk-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nifk | ||||||||
| Allele (18) | |||||||||
| Strain | WBStrain00003732 | ||||||||
| WBStrain00047598 | |||||||||
| WBStrain00053461 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00074273 | ||||||||
| 00074274 | |||||||||
| 00074275 | |||||||||
| 00074276 | |||||||||
| 00074277 | |||||||||
| 00118670 | |||||||||
| 00118671 | |||||||||
| Ortholog (29) | |||||||||
| Structured_description | Concise_description | T04A8.6 encodes an ortholog of S. cerevisiae NOP15 that may suppress tumorous growth in the germ line by ensuring robust larval germline proliferation; like PRO-1, -2, and -3, T04A8.6 is probably required for ribosome biogenesis, suggesting a link between biogenesis in the distal sheath and control of cell division in the germ line. | Paper_evidence | WBPaper00028280 | |||||
| WBPaper00028931 | |||||||||
| WBPaper00028932 | |||||||||
| WBPaper00028935 | |||||||||
| WBPaper00028936 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 23 Apr 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleolus. Is an ortholog of human NIFK (nucleolar protein interacting with the FHA domain of MKI67). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T04A8.6 | |||||||
| Corresponding_transcript | T04A8.6.1 | ||||||||
| Other_sequence (37) | |||||||||
| Associated_feature | WBsf650993 | ||||||||
| WBsf992194 | |||||||||
| WBsf226562 | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr6593 | ||||||||
| Expr1018819 | |||||||||
| Expr1035018 | |||||||||
| Expr1155975 | |||||||||
| Expr2005798 | |||||||||
| Expr2024015 | |||||||||
| Drives_construct | WBCnstr00004167 | ||||||||
| WBCnstr00030681 | |||||||||
| Construct_product | WBCnstr00004167 | ||||||||
| WBCnstr00030681 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (129) | |||||||||
| Interaction (280) | |||||||||
| Map_info | Map | III | Position | -2.90048 | |||||
| Positive | Positive_clone | T04A8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028280 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056095 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
