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WormBase Tree Display for Gene: WBGene00011394

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Name Class

WBGene00011394SMapS_parentSequenceT03D8
IdentityVersion2
NameCGC_namesshk-1Person_evidenceWBPerson260
WBPerson59688
Sequence_nameT03D8.7
Molecular_nameT03D8.7
T03D8.7.1
CE18925
Other_nameCELE_T03D8.7Accession_evidenceNDBBX284605
Public_namesshk-1
DB_infoDatabaseAceViewgene5V287
WormQTLgeneWBGene00011394
WormFluxgeneWBGene00011394
NDBlocus_tagCELE_T03D8.7
NCBIgene180363
RefSeqproteinNM_075615.4
TrEMBLUniProtAccQ9XTY0
UniProt_GCRPUniProtAccQ9XTY0
SpeciesCaenorhabditis elegans
HistoryVersion_change (2)
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsshk
Allele (14)
RNASeq_FPKM (74)
Ortholog (12)
Structured_descriptionAutomated_descriptionEnriched in neurons based on tiling array; microarray; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray; RNA-seq; and tiling array studies. Is affected by thirteen chemicals including hydrogen sulfide; methylmercuric chloride; and rotenone based on microarray and RNA-seq studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST03D8.7
Corresponding_transcriptT03D8.7.1
Experimental_infoRNAi_resultWBRNAi00035087Inferred_automaticallyRNAi_primary
WBRNAi00052268Inferred_automaticallyRNAi_primary
Expr_patternExpr1019429
Expr1155899
Expr2005772
Expr2023987
Microarray_results (17)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVE-neuron_embryo_enriched
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_larva_enriched
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
WBPaper00040285:H2S_12hr_upregulated
WBPaper00040420:FLP_enriched
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
WBPaper00044037:eat-2_upregulated
WBPaper00044316:CH3HgCl_7.5uM_downregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00044743:wdr-23_neuron_upregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045774:clk-1_upregulated
WBPaper00046024:sleep_downregulated_oscillating
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00051558:fog-2(q71)_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053402:cco-1(RNAi)_upregulated
WBPaper00053664:ins-11(tm1053)_upregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055013:hmg-4(RNAi)_upregulated
WBPaper00055013:spt-16(RNAi)_upregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055626:pry-1(mu38)_upregulated
WBPaper00055648:nerve-ring_expressed
WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated
WBPaper00057149:prgn-1(tm985)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00059117:B.subtilis_downregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060399:pqm-1(ok485)_downregulated_CoCl2_6hr
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060703:nas-38(ok3407)_upregulated
WBPaper00061040:eat-2(ad1116)_upregulated
WBPaper00061340:ALM_PLM
WBPaper00061527:M04G7.1-R06F6.7
WBPaper00061636:atracurium_downregulated
WBPaper00061651:AUA_enriched
WBPaper00062193:daf-16(RNAi)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062456:doxycycline_downregulated_CB4856_transcript
WBPaper00062456:doxycycline_downregulated_N2_transcript
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00064661:lpd-3(ok2138)_downregulated
WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
WBPaper00065623:99
WBPaper00065841:78_0
WBPaper00065841:90_0
WBPaper00029437:dcr-1_upregulated
WBPaper00031532:Larva_Pan_Neuronal_Enriched
WBPaper00031832:slr-2_regulated
WBPaper00032948:StarveUp3
WBPaper00035227:heat_shock_regulated
WBPaper00036123:Atrazine_regulated
WBPaper00036123:Cadmium_regulated
WBPaper00036286:Pattern_D
WBPaper00038172:aak-2overexpression_down_regulated
WBPaper00038172:crh-1null_up_regulated
WBPaper00038172:tax-6null_up_regulated
WBPaper00040821:Au-NP_regulated
WBPaper00040963:TA100_up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_24h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00042234:xpa-1_upregulated
WBPaper00042236:flcn-1(ok975)_upregulated
WBPaper00042258:DA1877_upregulated_GravidAdult
WBPaper00045263:isp-1(qm150)_upregulated
WBPaper00045263:nuo-6(qm200)_upregulated
WBPaper00045673:colistin_downregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00047070:N2_UV_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00048624:hlh-25(ok1710)_downregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00050515:nipi-3(fr4)_downregulated
WBPaper00050520:lagr-1(gk327);hyl-1(ok976)_downregulated
WBPaper00057098:SiO2-nanoparticles_downregulated
Interaction (32)
Map_infoPositivePositive_cloneT03D8Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionV25.2712
ReferenceWBPaper00041771
WBPaper00064216
MethodGene