WormBase Tree Display for Gene: WBGene00011286
expand all nodes | collapse all nodes | view schema
WBGene00011286 | SMap | S_parent | Sequence | R90 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name (5) | |||||||||
DB_info | Database | AceView | gene | 5N388 | |||||
WormQTL | gene | WBGene00011286 | |||||||
WormFlux | gene | WBGene00011286 | |||||||
NDB | locus_tag | CELE_R90.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00011286|UniProtKB=Q22034 | |||||||
family | PTHR21700 | ||||||||
NCBI | gene | 187890 | |||||||
RefSeq | protein | NM_073826.7 | |||||||
TREEFAM | TREEFAM_ID | TF315773 | |||||||
TrEMBL | UniProtAcc | Q22034 | |||||||
UniProt_GCRP | UniProtAcc | Q22034 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 20 Sep 2007 11:48:01 | WBPerson2970 | Name_change | CGC_name | ttr-29 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ttr | ||||||||
Allele | WBVar00473810 | ||||||||
WBVar01500212 | |||||||||
WBVar01500213 | |||||||||
WBVar01499299 | |||||||||
WBVar01057979 | |||||||||
WBVar01057980 | |||||||||
WBVar01057981 | |||||||||
WBVar01057982 | |||||||||
WBVar01499316 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00073837 | ||||||||
00118547 | |||||||||
Ortholog | WBGene00133952 | Caenorhabditis japonica | From_analysis | TreeFam | |||||
Inparanoid_8 | |||||||||
WBGene00031074 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00085705 | Caenorhabditis remanei | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00157529 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00056740 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
CSP26.g20090 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP40.g16334 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cnig_chr_V.g19572 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold629.g10808 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00409.g10958 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00532.g12519 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_02673 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_017637 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
OTIPU.nOt.2.0.1.g07632 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
OTIPU.nOt.2.0.1.g07821 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
chrV_pilon.g16126 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Paralog (62) | |||||||||
Structured_description | Automated_description | Predicted to be located in cell surface and extracellular region. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R90.4 | |||||||
Corresponding_CDS_history | R90.4:wp235 | ||||||||
Corresponding_transcript | R90.4.1 | ||||||||
Other_sequence (45) | |||||||||
Associated_feature | WBsf718435 | ||||||||
WBsf234741 | |||||||||
Experimental_info | RNAi_result | WBRNAi00052060 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00017925 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00034985 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1018865 | ||||||||
Expr1155693 | |||||||||
Expr2017594 | |||||||||
Expr2035733 | |||||||||
Drives_construct | WBCnstr00030776 | ||||||||
Construct_product | WBCnstr00030776 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (184) | |||||||||
Interaction (43) | |||||||||
Map_info | Map | V | Position | 4.72601 | Error | 0.000564 | |||
Positive | Positive_clone | R90 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00065331 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |