WormBase Tree Display for Gene: WBGene00011109
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| WBGene00011109 | SMap | S_parent | Sequence | R07E5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | gpch-1 | |||||||
| Sequence_name | R07E5.1 | ||||||||
| Molecular_name | R07E5.1 | ||||||||
| R07E5.1.1 | |||||||||
| CE00658 | |||||||||
| Other_name | CELE_R07E5.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | gpch-1 | ||||||||
| DB_info | Database | AceView | gene | 3F501 | |||||
| WormQTL | gene | WBGene00011109 | |||||||
| WormFlux | gene | WBGene00011109 | |||||||
| NDB | locus_tag | CELE_R07E5.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011109|UniProtKB=Q21827 | |||||||
| family | PTHR13384 | ||||||||
| NCBI | gene | 175574 | |||||||
| RefSeq | protein | NM_065492.5 | |||||||
| SwissProt | UniProtAcc | Q21827 | |||||||
| TREEFAM | TREEFAM_ID | TF314717 | |||||||
| UniProt_GCRP | UniProtAcc | Q21827 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 17 Mar 2020 17:44:33 | WBPerson1983 | Name_change | CGC_name | gpch-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gpch | ||||||||
| Allele (39) | |||||||||
| Strain | WBStrain00037042 | ||||||||
| In_cluster | conserved_miRNA_siRNA_cluster | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00073022 | ||||||||
| 00073023 | |||||||||
| 00073024 | |||||||||
| 00073025 | |||||||||
| 00073026 | |||||||||
| 00073027 | |||||||||
| 00118406 | |||||||||
| 00118407 | |||||||||
| Contained_in_operon | CEOP3184 | ||||||||
| Ortholog (39) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in mRNA processing. Predicted to be located in nucleus. Is an ortholog of human GPATCH1 (G-patch domain containing 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R07E5.1 | |||||||
| Corresponding_transcript | R07E5.1.1 | ||||||||
| Other_sequence (27) | |||||||||
| Associated_feature | WBsf224737 | ||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr1018363 | ||||||||
| Expr1034883 | |||||||||
| Expr1155163 | |||||||||
| Expr2005467 | |||||||||
| Expr2023688 | |||||||||
| Drives_construct | WBCnstr00030924 | ||||||||
| Construct_product | WBCnstr00030924 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (117) | |||||||||
| Interaction (21) | |||||||||
| Map_info | Map | III | Position | -3.17533 | |||||
| Positive | Positive_clone | R07E5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
