WormBase Tree Display for Gene: WBGene00011035
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WBGene00011035 | SMap | S_parent | Sequence | R05D11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | snrp-27 | Paper_evidence | WBPaper00033092 | |||||
Person_evidence | WBPerson713 | ||||||||
Sequence_name | R05D11.7 | ||||||||
Molecular_name | R05D11.7 | ||||||||
R05D11.7.1 | |||||||||
CE06242 | |||||||||
Other_name | CELE_R05D11.7 | Accession_evidence | NDB | BX284601 | |||||
Public_name | snrp-27 | ||||||||
DB_info | Database | AceView | gene | 1J179 | |||||
WormQTL | gene | WBGene00011035 | |||||||
WormFlux | gene | WBGene00011035 | |||||||
NDB | locus_tag | CELE_R05D11.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00011035|UniProtKB=Q21739 | |||||||
family | PTHR31077 | ||||||||
NCBI | gene | 172652 | |||||||
RefSeq | protein | NM_001383485.2 | |||||||
TREEFAM | TREEFAM_ID | TF314458 | |||||||
TrEMBL | UniProtAcc | Q21739 | |||||||
UniProt_GCRP | UniProtAcc | Q21739 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 22 Nov 2011 16:29:49 | WBPerson2970 | Name_change | CGC_name | snrp-27 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | snrp | ||||||||
Allele (12) | |||||||||
Strain | WBStrain00055588 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00072594 | ||||||||
00072595 | |||||||||
00072596 | |||||||||
00072597 | |||||||||
00072598 | |||||||||
00118335 | |||||||||
Contained_in_operon | CEOP1484 | ||||||||
Ortholog (18) | |||||||||
Structured_description | Automated_description | Predicted to be involved in RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Is an ortholog of human SNRNP27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R05D11.7 | |||||||
Corresponding_transcript | R05D11.7.1 | ||||||||
Other_sequence | CBC03220_1 | ||||||||
Dviv_isotig15457 | |||||||||
TSC14056_1 | |||||||||
Oden_isotig21835 | |||||||||
RSC02607_1 | |||||||||
ES567331.1 | |||||||||
Name_isotig03538 | |||||||||
PSC01949_1 | |||||||||
HBC14538_1 | |||||||||
CJC04530_1 | |||||||||
Dviv_isotig15456 | |||||||||
HGC01180_1 | |||||||||
OOC03643_1 | |||||||||
GW408551.1 | |||||||||
Acan_isotig01913 | |||||||||
JI177223.1 | |||||||||
HG10245 | |||||||||
RS08184 | |||||||||
Tcol_isotig12992 | |||||||||
ES413915.1 | |||||||||
Tcir_isotig09864 | |||||||||
Acan_isotig01914 | |||||||||
Associated_feature | WBsf656644 | ||||||||
WBsf218174 | |||||||||
WBsf218175 | |||||||||
Experimental_info | RNAi_result | WBRNAi00004047 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00034598 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00026025 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00026024 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00116974 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00026023 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062046 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00051271 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1015726 | ||||||||
Expr1034839 | |||||||||
Expr1154973 | |||||||||
Expr2015973 | |||||||||
Expr2034208 | |||||||||
Drives_construct | WBCnstr00030977 | ||||||||
Construct_product | WBCnstr00030977 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (118) | |||||||||
Interaction | WBInteraction000303523 | ||||||||
WBInteraction000420665 | |||||||||
WBInteraction000576689 | |||||||||
Map_info | Map | I | Position | 2.98902 | |||||
Positive | Positive_clone | R05D11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00033092 | ||||||||
WBPaper00036306 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00054863 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00064339 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |