WormBase Tree Display for Gene: WBGene00010993
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| WBGene00010993 | SMap | S_parent | Sequence | R03E1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | vha-20 | Person_evidence | WBPerson171 | |||||
| Sequence_name | R03E1.2 | ||||||||
| Molecular_name | R03E1.2 | ||||||||
| R03E1.2.1 | |||||||||
| CE18902 | |||||||||
| Other_name | CELE_R03E1.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | vha-20 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 09 Jan 2015 16:33:20 | WBPerson2970 | Name_change | CGC_name | vha-20 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vha | ||||||||
| Allele (37) | |||||||||
| Strain | WBStrain00051438 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Contained_in_operon | CEOPX128 | ||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00020500 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable signaling receptor activity. Involved in nematode larval development and regulation of intracellular pH. Located in apical plasma membrane. Expressed in amphid neurons. Human ortholog(s) of this gene implicated in X-linked parkinsonism-spasticity syndrome; congenital disorder of glycosylation type II; and syndromic X-linked intellectual disability Hedera type. Is an ortholog of human ATP6AP2 (ATPase H+ transporting accessory protein 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0050571 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18305) | ||||
| DOID:0112105 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18305) | ||||||
| DOID:0060806 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18305) | ||||||
| Molecular_info | Corresponding_CDS | R03E1.2 | |||||||
| Corresponding_transcript | R03E1.2.1 | ||||||||
| Other_sequence (54) | |||||||||
| Associated_feature | WBsf1007839 | ||||||||
| WBsf1007840 | |||||||||
| WBsf238202 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00091183 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00091182 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051179 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026015 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090872 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009029 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034558 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12676 | ||||||||
| Expr12677 | |||||||||
| Expr1028269 | |||||||||
| Expr1034822 | |||||||||
| Expr1154886 | |||||||||
| Expr2017987 | |||||||||
| Expr2036123 | |||||||||
| Drives_construct | WBCnstr00022597 | ||||||||
| WBCnstr00022598 | |||||||||
| WBCnstr00022599 | |||||||||
| WBCnstr00031010 | |||||||||
| Construct_product | WBCnstr00022597 | ||||||||
| WBCnstr00022598 | |||||||||
| WBCnstr00022599 | |||||||||
| WBCnstr00031010 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (131) | |||||||||
| Interaction (43) | |||||||||
| Map_info | Map | X | Position | 16.6417 | |||||
| Positive | Positive_clone | R03E1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024639 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00048272 | |||||||||
| WBPaper00049011 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058870 | |||||||||
| WBPaper00065140 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
