WormBase Tree Display for Gene: WBGene00010682
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WBGene00010682 | SMap | S_parent | Sequence | K08F8 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | nsph-1.1 | Person_evidence | WBPerson18244 | |||
Sequence_name | K08F8.5 | ||||||
Molecular_name | K08F8.5a | ||||||
K08F8.5a.1 | |||||||
CE52477 | |||||||
K08F8.5b | |||||||
CE43295 | |||||||
K08F8.5b.1 | |||||||
Other_name | CELE_K08F8.5 | Accession_evidence | NDB | BX284602 | |||
Public_name | nsph-1.1 | ||||||
DB_info | Database | AceView | gene | 2J57 | |||
WormQTL | gene | WBGene00010682 | |||||
WormFlux | gene | WBGene00010682 | |||||
NDB | locus_tag | CELE_K08F8.5 | |||||
Panther | gene | CAEEL|WormBase=WBGene00010682|UniProtKB=Q21365 | |||||
family | PTHR31578 | ||||||
NCBI | gene | 187165 | |||||
RefSeq | protein | NM_001361866.2 | |||||
NM_063463.5 | |||||||
TREEFAM | TREEFAM_ID | TF316764 | |||||
TrEMBL | UniProtAcc | P90926 | |||||
Q21365 | |||||||
UniProt_GCRP | UniProtAcc | Q21365 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (3) | ||||||
Split_into | WBGene00303068 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nsph | ||||||
Allele (36) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (25) | |||||||
Paralog | WBGene00007308 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00013474 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00021993 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00043743 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
WBGene00194734 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00013956 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00016516 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WBGene00022763 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WBGene00020202 | Caenorhabditis elegans | From_analysis | Panther | ||||
Structured_description | Automated_description | Enriched in ABalpppppp; ABpraaappp; NSM; Y cell; and in male based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by sixteen chemicals including methylmercuric chloride; manganese chloride; and D-glucose based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: Cytosolic motility protein. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | K08F8.5a | |||||
K08F8.5b | |||||||
Corresponding_CDS_history | K08F8.5a:wp263 | ||||||
K08F8.5b:wp196 | |||||||
K08F8.5c:wp264 | |||||||
Corresponding_transcript | K08F8.5a.1 | ||||||
K08F8.5b.1 | |||||||
Other_sequence | JI219299.1 | ||||||
ACC25014_1 | |||||||
Acan_isotig16693 | |||||||
Oden_isotig15499 | |||||||
EX540039.1 | |||||||
Associated_feature | WBsf657997 | ||||||
WBsf988819 | |||||||
WBsf1012744 | |||||||
WBsf221812 | |||||||
Experimental_info | RNAi_result | WBRNAi00095063 | Inferred_automatically | RNAi_primary | |||
WBRNAi00034157 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00016837 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00050331 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1015474 | ||||||
Expr1154033 | |||||||
Expr2004938 | |||||||
Expr2023160 | |||||||
Drives_construct | WBCnstr00031224 | ||||||
Construct_product | WBCnstr00031224 | ||||||
Microarray_results (27) | |||||||
Expression_cluster (160) | |||||||
Interaction | WBInteraction000163357 | ||||||
WBInteraction000199079 | |||||||
WBInteraction000270271 | |||||||
WBInteraction000289046 | |||||||
WBInteraction000328031 | |||||||
WBInteraction000346412 | |||||||
WBInteraction000424377 | |||||||
WBInteraction000503216 | |||||||
WBInteraction000521226 | |||||||
WBInteraction000547810 | |||||||
Map_info | Positive | Positive_clone | K08F8 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Interpolated_map_position | II | 0.884858 | |||||
Reference | WBPaper00064502 | ||||||
WBPaper00065331 | |||||||
Method | Gene |