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WormBase Tree Display for Gene: WBGene00010677

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Name Class

WBGene00010677SMapS_parentSequenceK08F4
IdentityVersion2
NameCGC_namegtbp-1Person_evidenceWBPerson1352
Sequence_nameK08F4.2
Molecular_nameK08F4.2
K08F4.2.1
CE37535
Other_nameCELE_K08F4.2Accession_evidenceNDBBX284604
Public_namegtbp-1
DB_infoDatabaseAceViewgene4K892
WormQTLgeneWBGene00010677
WormFluxgeneWBGene00010677
NDBlocus_tagCELE_K08F4.2
PanthergeneCAEEL|WormBase=WBGene00010677|UniProtKB=Q21351
familyPTHR10693
NCBIgene177880
RefSeqproteinNM_069441.9
TREEFAMTREEFAM_IDTF325464
TrEMBLUniProtAccQ21351
UniProt_GCRPUniProtAccQ21351
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:51WBPerson1971EventImportedInitial conversion from CDS class of WS125
203 Mar 2014 14:12:13WBPerson2970Name_changeCGC_namegtbp-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgtbp
Allele (55)
Strain (11)
RNASeq_FPKM (74)
GO_annotation (11)
Contained_in_operonCEOP4352
Ortholog (39)
Structured_descriptionAutomated_descriptionPredicted to enable mRNA binding activity. Located in cytoplasmic stress granule. Expressed widely. Is an ortholog of human G3BP1 (G3BP stress granule assembly factor 1) and G3BP2 (G3BP stress granule assembly factor 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSK08F4.2
Corresponding_CDS_historyK08F4.2:wp132
Corresponding_transcriptK08F4.2.1
Other_sequenceCR02321
CBC12393_1
CRC01774_1
Hbac_isotig01177
CR03720
CRC05090_1
Oden_isotig19389
CGC00291_1
CBC06784_1
CGC00644_1
Associated_feature (11)
Experimental_infoRNAi_result (19)
Expr_patternExpr14849
Expr16041
Expr16042
Expr1025331
Expr1034671
Expr1154021
Expr1200334
Expr1200335
Expr2012341
Expr2030578
Drives_constructWBCnstr00031229
Construct_productWBCnstr00031229
Microarray_results (23)
Expression_clusterWBPaper00027057:DCR-1_interacting_embryo
WBPaper00032528:L3_enriched
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00035211:age-1_vs_age-1_downregulated
WBPaper00035269:cde-1_regulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037047:aging_accelerated_insoluble_protein
WBPaper00037047:insoluble_protein
WBPaper00038118:aak-2(gt33)_upregulated
WBPaper00038213:E.coli(LF82)_72h_upregulated
WBPaper00038289:oocyte_protein
WBPaper00041072:UTX-1_interacting_protein
WBPaper00044426:rotenone_24h_downregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044760:germline_specific
WBPaper00045050:drh-3 (ne4253)_downregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00046012:tdp-1(ok803)_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00048644:germline_enriched
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00049545:cco-1(RNAi)_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00050182:lmn-1(L535P)_downregulated
WBPaper00050412:cco-1(RNAi)_upregulated_N2
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050686:glp-1(e2141)_downregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_cytoplasm_expressed
WBPaper00051245:cytoplasm_specific
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:zidovudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053713:Pheromone-induced_postdauer_vs_control_upregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_downregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00053814:25C_downregulated_PY79
WBPaper00054189:P.aeruginosa_regulated_protein
WBPaper00055648:germline_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056826:SGP_biased
WBPaper00056900:PID-3_interacting
WBPaper00057288:Cold_downregulated_transcript
WBPaper00059174:MEG-3_interacting
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059605:MUT-16_interacting
WBPaper00059763:neuron_expressed
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00061045:Y56A3A.22(cck200)_downregulated
WBPaper00061340:Neuroblast_AFD_RMD
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061377:MYRF-1_interacting
WBPaper00061377:PAN-1_interacting
WBPaper00061466:nath-10(icb99)_downregulated
WBPaper00061478:SUMO-conjugated_protein
WBPaper00061527:pbs-3_18439-rpn-5
WBPaper00061527:tomm-40_3370-eif-3.C_3529
WBPaper00061651:Germline_enriched
WBPaper00061753:csr-1(tor159)_downregulated_25C
WBPaper00062143:PQN-59_interacting
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062498:PPM-1.D_interacting
WBPaper00062554:MAGU-2_interacting
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064201:SNA-3_interacting
WBPaper00064315:mes-3(bn199)_downregulated_PGCs
WBPaper00064315:mes-4(bn73)_downregulated_EGCs
WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
WBPaper00064716:paraquat_upregulated
WBPaper00064871:hypoxia_upregulated_F2
WBPaper00065120:body-muscle-transcriptome
WBPaper00065158:AFD_depleted
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065373:sek-1(km4)_upregulated_Ref
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_3
WBPaper00025032:cluster_34
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031060:2-deoxy-D-glucose_downregulated
WBPaper00032165:differentially_expressed_with_age_medoid_6
WBPaper00032948:FedUp
WBPaper00034757:down_by_oxidative_stress
WBPaper00036286:Pattern_H
WBPaper00037901:GLD-1_mRNA_targets
WBPaper00040426:CYD-1_CDK-4_downregulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040821:Au-NP_regulated
WBPaper00040823:alg-1(gk214)_downregulated
WBPaper00040876:mir-35_upregulated
WBPaper00041002:HF_11d_2.0mM_Up
WBPaper00041207:CE_dauer_down
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00045960:L1-L4-lethargus_downregulated
WBPaper00045960:L4-lethargus_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc5767]:cluster_89
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(101_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_MD
[cgc5767]:expression_class_MDE
[cgc5767]:expression_class_MD_pd(41_min)
[cgc5767]:expression_class_ME
[cgc6390]:oogenesis-enriched
Interaction (221)
Map_infoMapIVPosition4.53146
PositivePositive_cloneK08F4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (11)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene