WormBase Tree Display for Gene: WBGene00010476

WBGene00010476 SMap: S_parent: Sequence: K01G5
  Identity: Version: 3
    Name: CGC_name: rnf-113 Person_evidence: WBPerson338
            WBPerson250
      Sequence_name: K01G5.1
      Molecular_name: K01G5.1
        K01G5.1.1
        CE26718
      Other_name: 3K846 Accession_evidence: EMBL AF304126
        tag-331
        CELE_K01G5.1 Accession_evidence: NDB BX284603
      Public_name: rnf-113
    DB_info: Database (13)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:51 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 22 Apr 2005 11:55:18 WBPerson2970 Name_change: CGC_name: tag-331
        3 22 Aug 2008 17:05:48 WBPerson2970 Name_change: CGC_name: rnf-113
                Other_name: tag-331
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rnf
    Allele (65)
    Strain: WBStrain00036198
    RNASeq_FPKM (74)
    GO_annotation (11)
    Contained_in_operon: CEOP3701
    Ortholog: WBGene00055819 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00037758 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00151057 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00122051 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00224990 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5037 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4036 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4900 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g9481 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g15340 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g10501 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g1322 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7754 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g4248 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g395 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00319.g9122 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_15407.g25028 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_21270.g26631 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_III.g9654 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold628.g7301 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00257.g8097 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_00726.g14869 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_11459 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010402 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g03598 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g7004 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30112320 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8937 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00245798 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00304693 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00260524 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00293958 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000004315 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0038772 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040825-1 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:12974 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:17267 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:1913631 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:1917192 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1359693 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Structured_description: Automated_description: Enables ubiquitin-protein transferase activity. Involved in protein ubiquitination. Located in nucleus. Expressed in head neurons; tail neurons; and ventral nerve cord. Human ortholog(s) of this gene implicated in nonphotosensitive trichothiodystrophy 5. Is an ortholog of human RNF113A (ring finger protein 113A). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0111868 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:12974)
  Molecular_info: Corresponding_CDS: K01G5.1
    Corresponding_CDS_history: K01G5.1:wp40
    Corresponding_transcript: K01G5.1.1
    Other_sequence (32)
    Associated_feature: WBsf978544
      WBsf994139
      WBsf1015849
      WBsf227511
    Transcription_factor: WBTranscriptionFactor001033
  Experimental_info: RNAi_result (14)
    Expr_pattern: Expr7600
      Expr9485
      Expr1017609
      Expr1034572
      Expr1153358
      Expr2015381
      Expr2033615
    Drives_construct: WBCnstr00012745
      WBCnstr00037852
    Construct_product: WBCnstr00014050
      WBCnstr00037852
    Antibody: WBAntibody00002410
    Microarray_results (24)
    Expression_cluster (94)
    Interaction (60)
  Map_info: Map: III Position: 5.2994 Error: 0.026825
    Positive: Positive_clone: K01G5 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5157
    Pseudo_map_position
  Reference (11)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene