WormBase Tree Display for Gene: WBGene00010456
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| WBGene00010456 | SMap | S_parent | Sequence | K01C8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | srdh-1 | Person_evidence | WBPerson9055 | |||||
| WBPerson55847 | |||||||||
| Sequence_name | K01C8.1 | ||||||||
| Molecular_name | K01C8.1 | ||||||||
| K01C8.1.1 | |||||||||
| CE36943 | |||||||||
| K01C8.1.2 | |||||||||
| Other_name | CELE_K01C8.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | srdh-1 | ||||||||
| DB_info | Database | AceView | gene | 2I557 | |||||
| WormQTL | gene | WBGene00010456 | |||||||
| WormFlux | gene | WBGene00010456 | |||||||
| NDB | locus_tag | CELE_K01C8.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010456|UniProtKB=Q21080 | |||||||
| family | PTHR48078 | ||||||||
| NCBI | gene | 174326 | |||||||
| RefSeq | protein | NM_063340.5 | |||||||
| TREEFAM | TREEFAM_ID | TF314863 | |||||||
| TrEMBL | UniProtAcc | Q21080 | |||||||
| UniProt_GCRP | UniProtAcc | Q21080 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 27 Oct 2021 12:29:35 | WBPerson1983 | Name_change | CGC_name | srdh-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srdh | ||||||||
| Allele (34) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00070245 | ||||||||
| 00070246 | |||||||||
| 00070247 | |||||||||
| 00070248 | |||||||||
| 00070249 | |||||||||
| 00070250 | |||||||||
| 00117863 | |||||||||
| 00117864 | |||||||||
| Ortholog (32) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Automated_description | Predicted to enable L-serine ammonia-lyase activity and L-threonine ammonia-lyase activity. Predicted to be involved in L-serine catabolic process; isoleucine biosynthetic process; and threonine catabolic process. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K01C8.1 | |||||||
| Corresponding_CDS_history | K01C8.1:wp127 | ||||||||
| Corresponding_transcript | K01C8.1.1 | ||||||||
| K01C8.1.2 | |||||||||
| Other_sequence | HCC10677_1 | ||||||||
| EX557539.1 | |||||||||
| AM744932.1 | |||||||||
| HG12056 | |||||||||
| EX561342.1 | |||||||||
| EX559769.1 | |||||||||
| CR03093 | |||||||||
| EX558274.1 | |||||||||
| Dviv_isotig07195 | |||||||||
| ACC07669_1 | |||||||||
| Dviv_isotig14483 | |||||||||
| EX547744.1 | |||||||||
| ACC13312_1 | |||||||||
| EX544788.1 | |||||||||
| EX536719.1 | |||||||||
| EX538081.1 | |||||||||
| EX535547.1 | |||||||||
| XIC04314_1 | |||||||||
| SS02154 | |||||||||
| Tcir_isotig28229 | |||||||||
| Tcol_isotig17229 | |||||||||
| EW744341.1 | |||||||||
| GPC00605_1 | |||||||||
| EW743393.1 | |||||||||
| EW744050.1 | |||||||||
| Dviv_isotig14484 | |||||||||
| HC08633 | |||||||||
| EL784578.1 | |||||||||
| Name_isotig06606 | |||||||||
| EW743563.1 | |||||||||
| Dviv_isotig07196 | |||||||||
| HG00542 | |||||||||
| JO473318.1 | |||||||||
| EW743715.1 | |||||||||
| EX549568.1 | |||||||||
| CJC14155_1 | |||||||||
| CRC02744_1 | |||||||||
| PSC03629_1 | |||||||||
| HGC09963_1 | |||||||||
| ACC22794_1 | |||||||||
| TDC03139_1 | |||||||||
| ACC09485_1 | |||||||||
| ACC20829_1 | |||||||||
| HCC01723_1 | |||||||||
| Dviv_isotig07194 | |||||||||
| HC05837 | |||||||||
| EX548362.1 | |||||||||
| CJC08828_1 | |||||||||
| Oden_isotig29111 | |||||||||
| HGC03963_1 | |||||||||
| EX535780.1 | |||||||||
| XIC00271_1 | |||||||||
| GP01158 | |||||||||
| GW409182.1 | |||||||||
| SSC00947_1 | |||||||||
| HC09703 | |||||||||
| TM02014 | |||||||||
| Dviv_isotig14485 | |||||||||
| EX556999.1 | |||||||||
| HCC01040_1 | |||||||||
| MIC09298_1 | |||||||||
| HC03345 | |||||||||
| EX540083.1 | |||||||||
| EX546550.1 | |||||||||
| EX558679.1 | |||||||||
| EX555135.1 | |||||||||
| EX538453.1 | |||||||||
| HC00688 | |||||||||
| EW744677.1 | |||||||||
| XI01514 | |||||||||
| HCC01039_1 | |||||||||
| Name_isotig04726 | |||||||||
| GPC00019_1 | |||||||||
| XI05192 | |||||||||
| EX561823.1 | |||||||||
| XIC03345_1 | |||||||||
| ACC05147_1 | |||||||||
| Acan_isotig11136 | |||||||||
| GP01774 | |||||||||
| TMC01760_1 | |||||||||
| OOC01567_1 | |||||||||
| Associated_feature | WBsf657954 | ||||||||
| WBsf657955 | |||||||||
| WBsf988687 | |||||||||
| WBsf1012663 | |||||||||
| WBsf221724 | |||||||||
| WBsf221725 | |||||||||
| Experimental_info | RNAi_result (5) | ||||||||
| Expr_pattern | Expr1028087 | ||||||||
| Expr1034561 | |||||||||
| Expr1153333 | |||||||||
| Expr2004642 | |||||||||
| Expr2022870 | |||||||||
| Drives_construct | WBCnstr00031406 | ||||||||
| Construct_product | WBCnstr00031406 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (217) | |||||||||
| Interaction (119) | |||||||||
| Map_info | Map | II | Position | 0.755243 | |||||
| Positive | Positive_clone | K01C8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
