WormBase Tree Display for Gene: WBGene00010333
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| WBGene00010333 | SMap | S_parent | Sequence | F59E10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | copz-1 | Person_evidence | WBPerson3188 | |||||
| Sequence_name | F59E10.3 | ||||||||
| Molecular_name | F59E10.3 | ||||||||
| F59E10.3.1 | |||||||||
| CE11494 | |||||||||
| Other_name | CELE_F59E10.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | copz-1 | ||||||||
| DB_info | Database | AceView | gene | 2L163 | |||||
| WormQTL | gene | WBGene00010333 | |||||||
| WormFlux | gene | WBGene00010333 | |||||||
| NDB | locus_tag | CELE_F59E10.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010333|UniProtKB=O17901 | |||||||
| family | PTHR11043 | ||||||||
| NCBI | gene | 174675 | |||||||
| RefSeq | protein | NM_063937.4 | |||||||
| SwissProt | UniProtAcc | O17901 | |||||||
| TREEFAM | TREEFAM_ID | TF300262 | |||||||
| UniProt_GCRP | UniProtAcc | O17901 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 08 Aug 2013 16:41:57 | WBPerson2970 | Name_change | CGC_name | copz-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | copz | ||||||||
| Allele (18) | |||||||||
| Strain | WBStrain00047488 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Contained_in_operon | CEOP2508 | ||||||||
| Ortholog (41) | |||||||||
| Structured_description | Concise_description | F59E10.3 encodes a zeta subunit of the coatomer (COPI) complex; in mass RNAi assays, F59E10.3 is required for embryonic, larval, and adult viability, for fertility, and for normal osmoregulation. | Paper_evidence | WBPaper00005654 | |||||
| WBPaper00006395 | |||||||||
| WBPaper00012764 | |||||||||
| WBPaper00012858 | |||||||||
| WBPaper00012863 | |||||||||
| WBPaper00012889 | |||||||||
| WBPaper00013106 | |||||||||
| WBPaper00013627 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Involved in embryo development; intracellular protein transport; and oocyte development. Predicted to be located in COPI-coated vesicle membrane and Golgi membrane. Predicted to be part of COPI vesicle coat. Is an ortholog of human COPZ1 (COPI coat complex subunit zeta 1) and COPZ2 (COPI coat complex subunit zeta 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F59E10.3 | |||||||
| Corresponding_transcript | F59E10.3.1 | ||||||||
| Other_sequence (51) | |||||||||
| Associated_feature | WBsf644634 | ||||||||
| WBsf222078 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr1020697 | ||||||||
| Expr1034511 | |||||||||
| Expr1152931 | |||||||||
| Expr2010460 | |||||||||
| Expr2028700 | |||||||||
| Drives_construct | WBCnstr00031495 | ||||||||
| Construct_product | WBCnstr00031495 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (105) | |||||||||
| Interaction (25) | |||||||||
| Map_info | Map | II | Position | 3.13066 | |||||
| Positive | Positive_clone | F59E10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003831 | ||||||||
| WBPaper00035228 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
