WormBase Tree Display for Gene: WBGene00010307
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| WBGene00010307 | SMap | S_parent | Sequence | F59B2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | skat-1 | Paper_evidence | WBPaper00044433 | |||||
| Person_evidence | WBPerson545 | ||||||||
| Sequence_name | F59B2.2 | ||||||||
| Molecular_name | F59B2.2 | ||||||||
| F59B2.2.1 | |||||||||
| CE20899 | |||||||||
| Other_name | CELE_F59B2.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | skat-1 | ||||||||
| DB_info | Database | AceView | gene | 3K84 | |||||
| WormQTL | gene | WBGene00010307 | |||||||
| WormFlux | gene | WBGene00010307 | |||||||
| NDB | locus_tag | CELE_F59B2.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010307|UniProtKB=P34479 | |||||||
| family | PTHR22950 | ||||||||
| NCBI | gene | 176271 | |||||||
| RefSeq | protein | NM_066588.7 | |||||||
| SwissProt | UniProtAcc | P34479 | |||||||
| UniProt_GCRP | UniProtAcc | P34479 | |||||||
| OMIM | gene | 608331 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 18 Nov 2013 10:40:57 | WBPerson2970 | Name_change | CGC_name | skat-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | skat | ||||||||
| Allele (29) | |||||||||
| Strain | WBStrain00051206 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00042614 | ||||||||
| 00042615 | |||||||||
| 00042616 | |||||||||
| 00042617 | |||||||||
| 00042618 | |||||||||
| 00042619 | |||||||||
| 00042620 | |||||||||
| Contained_in_operon | CEOP3564 | ||||||||
| Ortholog (61) | |||||||||
| Paralog (14) | |||||||||
| Structured_description | Automated_description | Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to be located in vacuolar membrane. Expressed in head neurons; intestine; tail neurons; ventral cord neurons; and vulval muscle. Human ortholog(s) of this gene implicated in iminoglycinuria. Is an ortholog of several human genes including SLC36A1 (solute carrier family 36 member 1); SLC36A2 (solute carrier family 36 member 2); and SLC36A4 (solute carrier family 36 member 4). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0112265 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18762) | ||||
| Molecular_info | Corresponding_CDS | F59B2.2 | |||||||
| Corresponding_transcript | F59B2.2.1 | ||||||||
| Other_sequence (16) | |||||||||
| Associated_feature | WBsf227216 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00016077 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00033182 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005013 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049145 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11365 | ||||||||
| Expr1017749 | |||||||||
| Expr1034498 | |||||||||
| Expr1152890 | |||||||||
| Expr2015829 | |||||||||
| Expr2034062 | |||||||||
| Drives_construct | WBCnstr00031518 | ||||||||
| Construct_product | WBCnstr00031518 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (90) | |||||||||
| Interaction | WBInteraction000183793 | ||||||||
| WBInteraction000195835 | |||||||||
| WBInteraction000202094 | |||||||||
| WBInteraction000206846 | |||||||||
| WBInteraction000207774 | |||||||||
| WBInteraction000219866 | |||||||||
| WBInteraction000235463 | |||||||||
| WBInteraction000294709 | |||||||||
| WBInteraction000294710 | |||||||||
| WBInteraction000303798 | |||||||||
| WBInteraction000305807 | |||||||||
| WBInteraction000331102 | |||||||||
| WBInteraction000331709 | |||||||||
| WBInteraction000336048 | |||||||||
| WBInteraction000337733 | |||||||||
| WBInteraction000338381 | |||||||||
| WBInteraction000340249 | |||||||||
| WBInteraction000354032 | |||||||||
| WBInteraction000365619 | |||||||||
| WBInteraction000379140 | |||||||||
| WBInteraction000381934 | |||||||||
| WBInteraction000385700 | |||||||||
| WBInteraction000394465 | |||||||||
| WBInteraction000402108 | |||||||||
| WBInteraction000404295 | |||||||||
| WBInteraction000411559 | |||||||||
| WBInteraction000413772 | |||||||||
| WBInteraction000455899 | |||||||||
| WBInteraction000456495 | |||||||||
| WBInteraction000520793 | |||||||||
| WBInteraction000582503 | |||||||||
| Map_info | Map | III | Position | 0.058404 | |||||
| Positive | Positive_clone | F59B2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002911 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
