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WormBase Tree Display for Gene: WBGene00010262

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Name Class

WBGene00010262SMapS_parentSequenceF58E10
IdentityVersion2
NameCGC_namedroe-4Person_evidenceWBPerson10050
Sequence_nameF58E10.7
Molecular_nameF58E10.7
F58E10.7.1
CE18789
Other_nameCELE_F58E10.7Accession_evidenceNDBBX284605
Public_namedroe-4
DB_infoDatabaseAceViewgene5O473
WormQTLgeneWBGene00010262
WormFluxgeneWBGene00010262
NDBlocus_tagCELE_F58E10.7
PanthergeneCAEEL|WormBase=WBGene00010262|UniProtKB=Q9XUW9
familyPTHR31712
NCBIgene179895
RefSeqproteinNM_074076.5
TREEFAMTREEFAM_IDTF321463
TrEMBLUniProtAccQ9XUW9
UniProt_GCRPUniProtAccQ9XUW9
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:51WBPerson1971EventImportedInitial conversion from CDS class of WS125
229 Apr 2015 12:07:40WBPerson2970Name_changeCGC_namedroe-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classdroe
AlleleWBVar00014740
WBVar00014745
WBVar02148287
WBVar01871355
WBVar00476040
WBVar00476041
WBVar01499621
WBVar01064751
WBVar01064752
WBVar01064753
WBVar01064754
WBVar01064755
WBVar01500212
WBVar01500213
WBVar01499299
WBVar01499316
WBVar00095006
RNASeq_FPKM (74)
OrthologWBGene00134378Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00130609Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00041189Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00032235Caenorhabditis briggsaeFrom_analysisOMA
WormBase-Compara
WBGene00035756Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00032526Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00035701Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00041191Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00041193Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00041194Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00041198Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00052949Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00148476Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00158646Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00151462Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00143872Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00151993Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00041192Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00303163Caenorhabditis briggsaeFrom_analysisWormBase-Compara
CSP26.g8635Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4326Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g9391Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g6828Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g7803Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g7807Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g999Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g24614Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g25872Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g14691Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g14939Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g14940Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g14941Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g15597Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g15600Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g19582Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g19584Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g19587Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g23031Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g7600Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_V.g16442Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g23659Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g23663Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g24744Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g25177Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g25179Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g25285Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g25420Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g25422Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g25591Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g25594Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g25595Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g25598Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g25599Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g25602Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g25608Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold481.g1856Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00888.g16492Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_02922.g28408Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_03686Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018719Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrV_pilon.g16396Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00210797Caenorhabditis japonicaFrom_analysisWormBase-Compara
nigoni.pc_2016.07.11_024.g28474Caenorhabditis nigoniFrom_analysisWormBase-Compara
nigoni.pc_2016.07.11_024.g28477Caenorhabditis nigoniFrom_analysisWormBase-Compara
nigoni.pc_2016.07.11_024.g28483Caenorhabditis nigoniFrom_analysisWormBase-Compara
ParalogWBGene00009087Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00018258Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00015322Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00010404Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00015325Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionAutomated_descriptionEnriched in excretory cell; muscle cell; and neurons based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by fourteen chemicals including rotenone; Neurotoxins; and metformin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF5354 and Family of unknown function (DUF5354).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF58E10.7
Corresponding_transcriptF58E10.7.1
Other_sequenceCRC03521_1
CSC01116_1
CR01831
FD514980.1
CBC12599_1
CBC07400_1
Associated_featureWBsf647505
WBsf232856
Experimental_infoRNAi_resultWBRNAi00033097Inferred_automaticallyRNAi_primary
WBRNAi00033100Inferred_automaticallyRNAi_primary
WBRNAi00049001Inferred_automaticallyRNAi_primary
WBRNAi00049000Inferred_automaticallyRNAi_primary
WBRNAi00015975Inferred_automaticallyRNAi_primary
Expr_patternExpr1028095
Expr1034474
Expr1152739
Expr2011093
Expr2029329
Drives_constructWBCnstr00031546
Construct_productWBCnstr00031546
Microarray_results (18)
Expression_cluster (252)
Interaction (105)
Map_infoMapVPosition5.88432
PositivePositive_cloneF58E10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00044557
WBPaper00064208
WBPaper00065158
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene