WormBase Tree Display for Gene: WBGene00010225

WBGene00010225 SMap: S_parent: Sequence: F58A3
  Identity: Version: 2
    Name: CGC_name: ttr-31
      Sequence_name: F58A3.5
      Molecular_name: F58A3.5
        F58A3.5.1
        CE11360
      Other_name: CELE_F58A3.5 Accession_evidence: NDB BX284606
      Public_name: ttr-31
    DB_info: Database: AceView gene XL624
        WormQTL gene WBGene00010225
        WormFlux gene WBGene00010225
        NDB locus_tag CELE_F58A3.5
        Panther gene CAEEL|WormBase=WBGene00010225|UniProtKB=Q93805
          family PTHR21700
        NCBI gene 186484
        RefSeq protein NM_077438.7
        TREEFAM TREEFAM_ID TF315773
        TrEMBL UniProtAcc Q93805
        UniProt_GCRP UniProtAcc Q93805
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:51 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 20 Sep 2007 11:48:01 WBPerson2970 Name_change: CGC_name: ttr-31
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ttr
    Allele (12)
    RNASeq_FPKM (74)
    GO_annotation: 00086660
      00117678
    Ortholog: WBGene00037122 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00058369 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00145892 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00137437 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g2535 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4113 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g12182 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14446 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g15909 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g10079 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g1365 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g20667 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g19657 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g12069 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00599.g12645 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ttr-31 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g21940 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00025.g1459 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_01210 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_023692 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g09153 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g21744 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0080500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g19990 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00266652 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog (62)
    Structured_description: Automated_description: Predicted to be located in cell surface and extracellular region. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F58A3.5
    Corresponding_transcript: F58A3.5.1
    Other_sequence (36)
    Associated_feature: WBsf237930
  Experimental_info: RNAi_result: WBRNAi00116056 Inferred_automatically: RNAi_primary
      WBRNAi00015929 Inferred_automatically: RNAi_primary
      WBRNAi00116053 Inferred_automatically: RNAi_primary
      WBRNAi00033058 Inferred_automatically: RNAi_primary
      WBRNAi00116055 Inferred_automatically: RNAi_primary
      WBRNAi00116054 Inferred_automatically: RNAi_primary
      WBRNAi00048923 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1019729
      Expr1152662
      Expr2017597
      Expr2035736
    Drives_construct: WBCnstr00031573
    Construct_product: WBCnstr00031573
    Microarray_results (18)
    Expression_cluster (202)
    Interaction (23)
  Map_info: Map: X Position: 2.84575
    Positive: Positive_clone: F58A3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00041771
    WBPaper00062212
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene