WormBase Tree Display for Gene: WBGene00010204
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| WBGene00010204 | SMap | S_parent | Sequence | F57F5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cpr-9 | Person_evidence | WBPerson625 | |||||
| Sequence_name | F57F5.1 | ||||||||
| Molecular_name | F57F5.1 | ||||||||
| F57F5.1.1 | |||||||||
| CE43083 | |||||||||
| Other_name | CELE_F57F5.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | cpr-9 | ||||||||
| DB_info | Database | AceView | gene | 5M483 | |||||
| WormQTL | gene | WBGene00010204 | |||||||
| WormFlux | gene | WBGene00010204 | |||||||
| NDB | locus_tag | CELE_F57F5.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010204|UniProtKB=Q20950 | |||||||
| family | PTHR12411 | ||||||||
| NCBI | gene | 179645 | |||||||
| RefSeq | protein | NM_001383417.2 | |||||||
| TREEFAM | TREEFAM_ID | TF314576 | |||||||
| TrEMBL | UniProtAcc | Q20950 | |||||||
| UniProt_GCRP | UniProtAcc | Q20950 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 10 Sep 2020 13:43:08 | WBPerson1983 | Name_change | CGC_name | cpr-9 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cpr | ||||||||
| Allele (40) | |||||||||
| Strain | WBStrain00033154 | ||||||||
| WBStrain00037484 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00069720 | ||||||||
| 00069721 | |||||||||
| 00069722 | |||||||||
| 00069723 | |||||||||
| 00069724 | |||||||||
| 00069725 | |||||||||
| 00069726 | |||||||||
| 00117661 | |||||||||
| 00117662 | |||||||||
| Ortholog (41) | |||||||||
| Paralog (28) | |||||||||
| Structured_description | Automated_description | Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in protein catabolic process. Predicted to be located in extracellular space. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease of the nervous system (multiple); carcinoma (multiple); and type 2 diabetes mellitus. Is an ortholog of human CTSB (cathepsin B). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9351 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2527) | ||||
| DOID:11054 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2527) | ||||||
| DOID:2671 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2527) | ||||||
| DOID:9352 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2527) | ||||||
| DOID:2377 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2527) | ||||||
| DOID:10941 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2527) | ||||||
| DOID:12842 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2527) | ||||||
| DOID:3068 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2527) | ||||||
| DOID:4914 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2527) | ||||||
| DOID:1612 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2527) | ||||||
| Molecular_info | Corresponding_CDS | F57F5.1 | |||||||
| Corresponding_CDS_history | F57F5.1:wp195 | ||||||||
| Corresponding_transcript | F57F5.1.1 | ||||||||
| Other_sequence (886) | |||||||||
| Associated_feature | WBsf647322 | ||||||||
| WBsf232584 | |||||||||
| WBsf232585 | |||||||||
| WBsf232586 | |||||||||
| WBsf232587 | |||||||||
| WBsf232588 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr1021368 | ||||||||
| Expr1034453 | |||||||||
| Expr1152628 | |||||||||
| Expr2004355 | |||||||||
| Expr2022580 | |||||||||
| Drives_construct | WBCnstr00031583 | ||||||||
| Construct_product | WBCnstr00031583 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (281) | |||||||||
| Interaction (177) | |||||||||
| Map_info | Map | V | Position | 3.57444 | |||||
| Positive | Positive_clone | F57F5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00043670 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058665 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
