WormBase Tree Display for Gene: WBGene00010149

WBGene00010149 SMap: S_parent: Sequence: F56D5
  Identity: Version: 1
    Name: Sequence_name: F56D5.5
      Molecular_name: F56D5.5
        F56D5.5.1
        CE05961
      Other_name: CELE_F56D5.5 Accession_evidence: NDB BX284604
      Public_name: F56D5.5
    DB_info: Database: AceView gene 4K172
        WormQTL gene WBGene00010149
        WormFlux gene WBGene00010149
        NDB locus_tag CELE_F56D5.5
        NCBI gene 177772
        RefSeq protein NM_069259.5
        TREEFAM TREEFAM_ID TF322971
        TrEMBL UniProtAcc Q20885
        UniProt_GCRP UniProtAcc Q20885
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:51 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (17)
    RNASeq_FPKM (74)
    Ortholog: WBGene00063821 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00073810 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00131096 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
      GCK72_013426 Caenorhabditis remanei From_analysis: WormBase-Compara
    Paralog: WBGene00012581 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
    Structured_description: Automated_description: Enriched in MC neuron; germ line; hypodermis; and rect_D based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by sixteen chemicals including methylmercury hydroxide; 1-methylnicotinamide; and rotenone based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F56D5.5
    Corresponding_transcript: F56D5.5.1
    Associated_feature: WBsf230565
      WBsf230566
  Experimental_info: RNAi_result: WBRNAi00078640 Inferred_automatically: RNAi_primary
      WBRNAi00032962 Inferred_automatically: RNAi_primary
      WBRNAi00015828 Inferred_automatically: RNAi_primary
      WBRNAi00078543 Inferred_automatically: RNAi_primary
      WBRNAi00015827 Inferred_automatically: RNAi_primary
      WBRNAi00048715 Inferred_automatically: RNAi_primary
      WBRNAi00048714 Inferred_automatically: RNAi_primary
      WBRNAi00062277 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022635
      Expr1034435
      Expr1152463
      Expr2004298
      Expr2022522
    Drives_construct: WBCnstr00031627
    Construct_product: WBCnstr00031627
    Microarray_results (18)
    Expression_cluster: WBPaper00028788:MPK-1_Response_Weak
      WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00033065:isp-1-1(qm150)_upregulated
      WBPaper00035197:fer-1_upregulated
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
      WBPaper00043945:MeHg_upregulated
      WBPaper00044260:1-methylnicotinamide_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044760:germline_specific
      WBPaper00045521:Oogenic
      WBPaper00045618:puf-8_downregulated
      WBPaper00045729:gld-2(RNAi)_downregulated
      WBPaper00045774:clk-1_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
      WBPaper00050163:let-418(RNAi)_upregulated_100-cell-embryo
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
      WBPaper00050990:hypodermis_enriched
      WBPaper00050990:hypodermis_expressed
      WBPaper00051039:germline_enriched
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00054191:H3.3(null)_L1_upregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00054758:alg-1(gk204)_downregulated
      WBPaper00054872:egl-9(sa307)_upregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055386:daf-2(e1370)_downregulated
      WBPaper00055482:Tunicamycin_upregulated
      WBPaper00055941:atfs-1(et15)_downregulated
      WBPaper00055941:nuo-6(qm200)_downregulated
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056161:hermaphrodite_enriched_siRNA
      WBPaper00056167:Cry5B_upregulated
      WBPaper00056169:rrf-3(pk1426)_upregulated_adult
      WBPaper00058598:mex-1(or286)_downregulated
      WBPaper00058598:mex-3(eu149)_downregulated
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00059117:B.subtilis_downregulated
      WBPaper00059334:sacy-1(depletion)_regulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00059728:5ug_cholesterol_downregulated
      WBPaper00059728:20ug_cholesterol_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060445:ikb-1(nr2027)_upregulated_L4
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060764:swsn-1(os22ts)_downregulated
      WBPaper00061007:HB101_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061340:MC
      WBPaper00061340:rect_D
      WBPaper00061424:Diet_MYb120_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061527:Y46G5A.28-Y44A6C.2
      WBPaper00061613:human-alpha-Synuclein(A53T)_upregulated
      WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_upregulated
      WBPaper00061613:human-amyloid-beta_upregulated
      WBPaper00062146:MOG-7-degron_2h_regulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062456:doxycycline_downregulated_CB4856_transcript
      WBPaper00062456:doxycycline_downregulated_N2_transcript
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00064156:lbp-3(overexpress)_downregulated
      WBPaper00064509:static-magnetic-field_downregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_25C
      WBPaper00065835:Day5_vs_Day1_upregulated
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066004:tdp-1(csb38)_downregulated
      WBPaper00066110:Cisplatin_downregulated_tetraploid
      WBPaper00066110:Doxorubicin_downregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_5
      cgc4489_group_23
      WBPaper00025032:cluster_33
      WBPaper00029437:dcr-1_downregulated
      WBPaper00032062:age_regulated_genes
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_D
      WBPaper00037695:LD_3-day
      WBPaper00038427:lin-54_embryo_changed
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00042331:a-SWCNTs_upregulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045673:colistin_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00056330:mrps-5(RNAi)_downregulated
      [cgc5767]:cluster_21
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(53_min)
      [cgc5767]:expression_class_E_pi(23_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc5767]:expression_class_MET
      [cgc5976]:class_2
      [cgc6390]:Cluster_A
      [cgc6390]:Cluster_E
      [cgc6390]:oogenesis-enriched
    Interaction (98)
  Map_info: Positive: Positive_clone: F56D5 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 4.2373
  Reference: WBPaper00065331
  Method: Gene