WormBase Tree Display for Gene: WBGene00009996

WBGene00009996 SMap: S_parent: Sequence: CHROMOSOME_V
  Identity: Version: 2
    Name: CGC_name: sde-2
      Sequence_name: F53F4.14
      Molecular_name: F53F4.14
        F53F4.14.1
        CE29593
        F53F4.14.2
      Other_name: CELE_F53F4.14 Accession_evidence: NDB BX284605
      Public_name: sde-2
    DB_info: Database: AceView gene 5O109
        WormQTL gene WBGene00009996
        WormFlux gene WBGene00009996
        NDB locus_tag CELE_F53F4.14
        Panther gene CAEEL|WormBase=WBGene00009996|UniProtKB=G5EC45
          family PTHR12786
        NCBI gene 179852
        RefSeq protein NM_073977.7
        TREEFAM TREEFAM_ID TF314323
        TrEMBL UniProtAcc G5EC45
        UniProt_GCRP UniProtAcc G5EC45
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 13 Mar 2020 16:56:07 WBPerson1983 Name_change: CGC_name: sde-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sde
    Allele (65)
    RNASeq_FPKM (74)
    GO_annotation (13)
    Contained_in_operon: CEOP5396
    Ortholog (35)
    Paralog: WBGene00011758 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in RNA splicing and mRNA processing. Predicted to be located in nucleus. Is an ortholog of human SDE2 (SDE2 telomere maintenance homolog). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F53F4.14
    Corresponding_CDS_history: F53F4.14:wp57
    Corresponding_transcript: F53F4.14.1
      F53F4.14.2
    Other_sequence (26)
    Associated_feature: WBsf647473
      WBsf232803
      WBsf232804
  Experimental_info: RNAi_result: WBRNAi00007722 Inferred_automatically: RNAi_primary
      WBRNAi00048151 Inferred_automatically: RNAi_primary
      WBRNAi00015524 Inferred_automatically: RNAi_primary
      WBRNAi00000601 Inferred_automatically: RNAi_primary
      WBRNAi00077844 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016187
      Expr1034358
      Expr1151960
      Expr2004075
      Expr2022299
    Drives_construct: WBCnstr00031754
    Construct_product: WBCnstr00031754
    Microarray_results (21)
    Expression_cluster (117)
    Interaction (28)
  Map_info: Map: V Position: 5.53691
    Positive: Positive_clone: F53F4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene