WormBase Tree Display for Gene: WBGene00009977
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WBGene00009977 | SMap | S_parent | Sequence | F53C11 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | swan-1 | Person_evidence | WBPerson389 | |||
Sequence_name | F53C11.8 | ||||||
Molecular_name | F53C11.8 | ||||||
F53C11.8.1 | |||||||
CE10918 | |||||||
Other_name | CELE_F53C11.8 | Accession_evidence | NDB | BX284605 | |||
Public_name | swan-1 | ||||||
DB_info | Database (11) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | swan | ||||||
Allele (61) | |||||||
Strain (5) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (13) | |||||||
Contained_in_operon | CEOP5400 | ||||||
Ortholog (33) | |||||||
Paralog | WBGene00009976 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
Structured_description | Concise_description | swan-1 encodes a protein that belongs to the family of AN11 WD repeat proteins; WD repeats are considered to form a scaffold for protein-protein interactions; SWAN-1 was initially identified as a protein that interacts with UNC-115 and the RAC proteins-CED-10, MIG-2 and RAC-2; genetic interaction studies with the Rac genes indicate that swan-1 is a negative regulator of Rac GTPase function during morphogenesis and phagocytosis of apoptotic cells; swan-1 is expressed in most cells throughout development and is predominant in the cytoplasm. | Paper_evidence | WBPaper00028497 | |||
Curator_confirmed | WBPerson324 | ||||||
Date_last_updated | 01 Oct 2008 00:00:00 | ||||||
Automated_description | Enables LIM domain binding activity and small GTPase binding activity. Involved in several processes, including regulation of cellular component organization; response to heat; and response to osmotic stress. Located in cytoplasm. Expressed in several structures, including neuroblasts and neurons. Is an ortholog of human DCAF7 (DDB1 and CUL4 associated factor 7). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F53C11.8 | |||||
Corresponding_transcript | F53C11.8.1 | ||||||
Other_sequence (34) | |||||||
Associated_feature | WBsf655606 | ||||||
WBsf982032 | |||||||
WBsf1001891 | |||||||
WBsf1020763 | |||||||
WBsf234872 | |||||||
WBsf234873 | |||||||
Experimental_info | RNAi_result | WBRNAi00048106 | Inferred_automatically | RNAi_primary | |||
WBRNAi00015493 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00103046 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00032685 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00084262 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr8273 | ||||||
Expr1013192 | |||||||
Expr1034348 | |||||||
Expr1151916 | |||||||
Expr2017148 | |||||||
Expr2035284 | |||||||
Drives_construct | WBCnstr00013229 | ||||||
WBCnstr00019891 | |||||||
WBCnstr00031770 | |||||||
Construct_product | WBCnstr00019891 | ||||||
WBCnstr00031770 | |||||||
Microarray_results (21) | |||||||
Expression_cluster (128) | |||||||
Interaction (31) | |||||||
Map_info | Map | V | Position | 5.5935 | Error | 0.002407 | |
Positive | Positive_clone | F53C11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 5333 | |||||
4207 | |||||||
4873 | |||||||
Pseudo_map_position | |||||||
Reference (11) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |