WormBase Tree Display for Gene: WBGene00009886

WBGene00009886 SMap: S_parent: Sequence: F49E2
  Identity: Version: 1
    Name: Sequence_name: F49E2.2
      Molecular_name: F49E2.2a
        F49E2.2a.1
        CE31527
        F49E2.2c
        CE23752
        F49E2.2a.2
        F49E2.2a.3
        F49E2.2a.4
        F49E2.2c.1
      Other_name: CELE_F49E2.2 Accession_evidence: NDB BX284606
      Public_name: F49E2.2
    DB_info: Database (9)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (118)
    RNASeq_FPKM (74)
    Ortholog: WBGene00036146 Caenorhabditis briggsae Person_evidence: WBPerson1971
          From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00059765 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00153005 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00138209 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g3978 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g12504 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g1441 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g21558 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9435 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g15348 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g7102 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g5455 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g10605 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g4749 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-F49E2.2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g13467 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00008.g594 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_02217 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_023323 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g07528 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_X0056500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g19762 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00280688 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in several structures, including gonad; mechanosensory neurons; rectal epithelial cell; rectum; and somatic gonad precursor based on microarray; tiling array; RNA-seq; proteomic; and single-cell RNA-seq studies. Is affected by several genes including skn-1; glp-1; and dpy-10 based on RNA-seq; proteomic; and microarray studies. Is affected by thirteen chemicals including stavudine; Zidovudine; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SH3 domain; Phosphorylation site; and SH3-like domain superfamily. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F49E2.2a
      F49E2.2c
    Corresponding_CDS_history: F49E2.2:wp83
      F49E2.2b:wp271
    Corresponding_transcript: F49E2.2a.1
      F49E2.2a.2
      F49E2.2a.3
      F49E2.2a.4
      F49E2.2c.1
    Other_sequence: ES409587.1
      CR03260
      HBC02261_1
      Hbac_isotig04025
      CRC06179_1
      Acan_isotig08913
      Dviv_isotig25164
      Oden_contig24378
      CJC06859_1
      CRC09473_1
    Associated_feature: WBsf663180
      WBsf663181
      WBsf1006475
      WBsf1006476
      WBsf236179
      WBsf236180
      WBsf236181
      WBsf236182
  Experimental_info: RNAi_result: WBRNAi00015326 Inferred_automatically: RNAi_primary
      WBRNAi00047862 Inferred_automatically: RNAi_primary
      WBRNAi00032545 Inferred_automatically: RNAi_primary
      WBRNAi00015327 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1011257
      Expr1034311
      Expr1151693
      Expr2003942
      Expr2022164
    Drives_construct: WBCnstr00031843
    Construct_product: WBCnstr00031843
    Microarray_results (29)
    Expression_cluster (165)
    Interaction (39)
  Map_info: Positive: Positive_clone: F49E2 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X 1.4213
  Method: Gene