WormBase Tree Display for Gene: WBGene00009886
expand all nodes | collapse all nodes | view schema
| WBGene00009886 | SMap | S_parent | Sequence | F49E2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F49E2.2 | |||||||
| Molecular_name | F49E2.2a | ||||||||
| F49E2.2a.1 | |||||||||
| CE31527 | |||||||||
| F49E2.2c | |||||||||
| CE23752 | |||||||||
| F49E2.2a.2 | |||||||||
| F49E2.2a.3 | |||||||||
| F49E2.2a.4 | |||||||||
| F49E2.2c.1 | |||||||||
| Other_name | CELE_F49E2.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | F49E2.2 | ||||||||
| DB_info | Database | AceView | gene | XK191 | |||||
| WormQTL | gene | WBGene00009886 | |||||||
| SignaLink | protein | WBGene00009886 | |||||||
| WormFlux | gene | WBGene00009886 | |||||||
| NDB | locus_tag | CELE_F49E2.2 | |||||||
| NCBI | gene | 181177 | |||||||
| RefSeq | protein | NM_001392825.1 | |||||||
| NM_001129675.5 | |||||||||
| TrEMBL | UniProtAcc | Q20621 | |||||||
| A6ZJ46 | |||||||||
| UniProt_GCRP | UniProtAcc | A6ZJ46 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (118) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (23) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including gonad; mechanosensory neurons; rectal epithelial cell; rectum; and somatic gonad precursor based on microarray; tiling array; RNA-seq; proteomic; and single-cell RNA-seq studies. Is affected by several genes including skn-1; glp-1; and dpy-10 based on RNA-seq; proteomic; and microarray studies. Is affected by thirteen chemicals including stavudine; Zidovudine; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SH3 domain; Phosphorylation site; and SH3-like domain superfamily. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F49E2.2a | |||||||
| F49E2.2c | |||||||||
| Corresponding_CDS_history (2) | |||||||||
| Corresponding_transcript | F49E2.2a.1 | ||||||||
| F49E2.2a.2 | |||||||||
| F49E2.2a.3 | |||||||||
| F49E2.2a.4 | |||||||||
| F49E2.2c.1 | |||||||||
| Other_sequence | ES409587.1 | ||||||||
| CR03260 | |||||||||
| HBC02261_1 | |||||||||
| Hbac_isotig04025 | |||||||||
| CRC06179_1 | |||||||||
| Acan_isotig08913 | |||||||||
| Dviv_isotig25164 | |||||||||
| Oden_contig24378 | |||||||||
| CJC06859_1 | |||||||||
| CRC09473_1 | |||||||||
| Associated_feature | WBsf663180 | ||||||||
| WBsf663181 | |||||||||
| WBsf1006475 | |||||||||
| WBsf1006476 | |||||||||
| WBsf236179 | |||||||||
| WBsf236180 | |||||||||
| WBsf236181 | |||||||||
| WBsf236182 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00015326 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00047862 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032545 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015327 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1011257 | ||||||||
| Expr1034311 | |||||||||
| Expr1151693 | |||||||||
| Expr2003942 | |||||||||
| Expr2022164 | |||||||||
| Drives_construct | WBCnstr00031843 | ||||||||
| Construct_product | WBCnstr00031843 | ||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (165) | |||||||||
| Interaction | WBInteraction000030829 | ||||||||
| WBInteraction000031558 | |||||||||
| WBInteraction000325724 | |||||||||
| WBInteraction000364516 | |||||||||
| WBInteraction000364517 | |||||||||
| WBInteraction000364518 | |||||||||
| WBInteraction000364519 | |||||||||
| WBInteraction000364520 | |||||||||
| WBInteraction000364521 | |||||||||
| WBInteraction000513218 | |||||||||
| WBInteraction000516174 | |||||||||
| WBInteraction000521486 | |||||||||
| WBInteraction000546060 | |||||||||
| WBInteraction000546061 | |||||||||
| WBInteraction000546062 | |||||||||
| WBInteraction000546063 | |||||||||
| WBInteraction000546064 | |||||||||
| WBInteraction000546065 | |||||||||
| WBInteraction000546066 | |||||||||
| WBInteraction000546067 | |||||||||
| WBInteraction000546068 | |||||||||
| WBInteraction000546069 | |||||||||
| WBInteraction000546070 | |||||||||
| WBInteraction000546071 | |||||||||
| WBInteraction000546072 | |||||||||
| WBInteraction000546073 | |||||||||
| WBInteraction000546074 | |||||||||
| WBInteraction000546075 | |||||||||
| WBInteraction000546076 | |||||||||
| WBInteraction000546077 | |||||||||
| WBInteraction000546078 | |||||||||
| WBInteraction000546079 | |||||||||
| WBInteraction000546080 | |||||||||
| WBInteraction000546081 | |||||||||
| WBInteraction000563858 | |||||||||
| WBInteraction000566315 | |||||||||
| WBInteraction000566594 | |||||||||
| WBInteraction000568491 | |||||||||
| WBInteraction000580674 | |||||||||
| Map_info | Positive | Positive_clone | F49E2 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | X | 1.4213 | |||||||
| Method | Gene |
