WormBase Tree Display for Gene: WBGene00009835

WBGene00009835 SMap: S_parent: Sequence: F47H4
  Identity: Version: 1
    Name: Sequence_name: F47H4.2
      Molecular_name: F47H4.2a
        F47H4.2a.1
        CE37016
        F47H4.2b
        CE46710
        F47H4.2b.1
      Other_name: CELE_F47H4.2 Accession_evidence: NDB BX284605
      Public_name: F47H4.2
    DB_info: Database: AceView gene 5R839
        WormQTL gene WBGene00009835
        WormFlux gene WBGene00009835
        NDB locus_tag CELE_F47H4.2
        Panther gene CAEEL|WormBase=WBGene00009835|UniProtKB=B3WFZ1
          family PTHR23014
        NCBI gene 180150
        RefSeq protein NM_001136426.5
            NM_074995.8
        TREEFAM TREEFAM_ID TF322099
        TrEMBL UniProtAcc B3WFZ1
            O45527
        UniProt_GCRP UniProtAcc B3WFZ1
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar02122255
      WBVar01848441
      WBVar01499524
      WBVar01499525
      WBVar01497332
      WBVar02055083
      WBVar02124497
      WBVar01086385
      WBVar01086386
      WBVar01086387
      WBVar01086388
      WBVar01086389
      WBVar01086390
      WBVar01086391
      WBVar01689705
      WBVar01086392
      WBVar01086393
      WBVar01086394
      WBVar01086395
      WBVar01086396
      WBVar01086397
      WBVar01086398
      WBVar01499566
      WBVar01086399
      WBVar01086400
      WBVar01086401
      WBVar01086402
      WBVar01086403
      WBVar01086404
      WBVar01086405
      WBVar01086406
      WBVar02073458
      WBVar02122864
      WBVar01086407
      WBVar01086408
      WBVar01086409
      WBVar01499945
      WBVar01086410
      WBVar02137999
      WBVar01086411
      WBVar01844632
      WBVar01498290
      WBVar01086412
      WBVar01086413
      WBVar01086414
      WBVar01086415
      WBVar01086416
      WBVar00091135
      WBVar01086417
      WBVar01086418
      WBVar01086419
      WBVar01086420
      WBVar01086421
      WBVar01086422
      WBVar02122328
      WBVar01086423
      WBVar01498855
      WBVar01086424
      WBVar01086425
      WBVar01086426
      WBVar01086427
      WBVar01086428
      WBVar01086429
      WBVar01086430
      WBVar01086431
      WBVar01086432
      WBVar01086433
      WBVar01086434
      WBVar01498682
      WBVar01086435
      WBVar01086436
      WBVar01086437
      WBVar01086438
      WBVar01086439
      WBVar01086440
      WBVar01086441
      WBVar02121796
      WBVar01086442
      WBVar01595265
      WBVar01086443
      WBVar01595266
      WBVar01595267
      WBVar01086444
      WBVar01086445
      WBVar01086446
      WBVar01499446
      WBVar01498710
      WBVar02123303
      WBVar01497255
      WBVar01485299
      WBVar01498549
      WBVar00595329
      WBVar00595330
      WBVar00595331
      WBVar02121298
      WBVar02124059
      WBVar00047555
      WBVar01498746
      WBVar01499299
      WBVar02124430
      WBVar02123142
      WBVar00483287
      WBVar00483288
      WBVar00483289
      WBVar00483290
      WBVar00483291
      WBVar00483292
      WBVar00483293
      WBVar00483294
      WBVar00483295
      WBVar00483296
      WBVar00483297
      WBVar00483298
      WBVar00483299
      WBVar02124270
      WBVar00483300
      WBVar01498957
      WBVar00483301
      WBVar00483302
      WBVar00091250
      WBVar01661257
    RNASeq_FPKM (74)
    Ortholog: WBGene00056629 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00027443 Caenorhabditis briggsae From_analysis: OrthoMCL
      WBGene00039349 Caenorhabditis briggsae From_analysis: OrthoMCL
      WBGene00034515 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00061051 Caenorhabditis remanei From_analysis: Inparanoid_8
      WBGene00081970 Caenorhabditis remanei From_analysis: Inparanoid_8
      chrV_pilon.g17435 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (27)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in several structures, including ABalaaaarl; ABalaaaarr; ABplaapaaa; ABplpaaaaa; and interfacial epithelial cell based on single-cell RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by sixteen chemicals including Tunicamycin; 4-bromodiphenyl ether; and Alovudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Domain of unknown function DUF38/FTH, Caenorhabditis species and FTH domain. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info (4)
  Experimental_info: RNAi_result: WBRNAi00047702 Inferred_automatically: RNAi_primary
      WBRNAi00015219 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1151539
      Expr2003870
      Expr2022093
    Drives_construct: WBCnstr00031882
    Construct_product: WBCnstr00031882
    Microarray_results (21)
    Expression_cluster (208)
    Interaction: WBInteraction000260077
      WBInteraction000566997
  Map_info: Positive: Positive_clone: F47H4 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 12.8896
  Reference: WBPaper00012854
  Method: Gene