WormBase Tree Display for Gene: WBGene00009783
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| WBGene00009783 | SMap | S_parent | Sequence | F46C5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rer-1 | Person_evidence | WBPerson3858 | |||||
| Sequence_name | F46C5.8 | ||||||||
| Molecular_name | F46C5.8 | ||||||||
| F46C5.8.1 | |||||||||
| CE03349 | |||||||||
| Other_name | CELE_F46C5.8 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | rer-1 | ||||||||
| DB_info | Database | AceView | gene | 2J103 | |||||
| WormQTL | gene | WBGene00009783 | |||||||
| WormFlux | gene | WBGene00009783 | |||||||
| NDB | locus_tag | CELE_F46C5.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009783|UniProtKB=P52879 | |||||||
| family | PTHR10743 | ||||||||
| NCBI | gene | 174410 | |||||||
| RefSeq | protein | NM_001381540.2 | |||||||
| SwissProt | UniProtAcc | P52879 | |||||||
| TREEFAM | TREEFAM_ID | TF300029 | |||||||
| UniProt_GCRP | UniProtAcc | P52879 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 15 Mar 2007 17:00:31 | WBPerson2970 | Name_change | CGC_name | rer-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rer | ||||||||
| Allele (31) | |||||||||
| Strain | WBStrain00003665 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (38) | |||||||||
| Structured_description | Automated_description | Involved in IRE1-mediated unfolded protein response. Predicted to be located in endoplasmic reticulum and membrane. Is an ortholog of human RER1 (retention in endoplasmic reticulum sorting receptor 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F46C5.8 | |||||||
| Corresponding_transcript | F46C5.8.1 | ||||||||
| Other_sequence | CR00861 | ||||||||
| Dviv_isotig17008 | |||||||||
| ASC01699_1 | |||||||||
| PVC00517_1 | |||||||||
| ACC15141_1 | |||||||||
| Oden_isotig14905 | |||||||||
| DA05080 | |||||||||
| XIC04932_1 | |||||||||
| CSC00142_1 | |||||||||
| HG00568 | |||||||||
| XIC03063_1 | |||||||||
| HBC04320_1 | |||||||||
| CBC13059_1 | |||||||||
| BUC00048_1 | |||||||||
| FD514783.1 | |||||||||
| FG971596.1 | |||||||||
| PPC16569_1 | |||||||||
| XI04442 | |||||||||
| XI00360 | |||||||||
| OOC03907_1 | |||||||||
| SS03521 | |||||||||
| Hbac_isotig02614 | |||||||||
| DAC00756_1 | |||||||||
| Acan_isotig15538 | |||||||||
| CJC09407_1 | |||||||||
| Dviv_isotig17009 | |||||||||
| BXC07082_1 | |||||||||
| FG976901.1 | |||||||||
| SSC01835_1 | |||||||||
| AS00680 | |||||||||
| JI168659.1 | |||||||||
| Tcol_isotig25452 | |||||||||
| CR08705 | |||||||||
| ACC21312_1 | |||||||||
| GRC00063_1 | |||||||||
| OVC01339_1 | |||||||||
| HGC06051_1 | |||||||||
| CBC08661_1 | |||||||||
| AA618875.1 | |||||||||
| CV199540.1 | |||||||||
| FG977944.1 | |||||||||
| NBC07245_1 | |||||||||
| EY464330.1 | |||||||||
| GR14072 | |||||||||
| JI182806.1 | |||||||||
| FC552833.1 | |||||||||
| Acan_isotig12184 | |||||||||
| FC553053.1 | |||||||||
| Oden_isotig14904 | |||||||||
| NB08808 | |||||||||
| CRC01316_1 | |||||||||
| Associated_feature | WBsf644507 | ||||||||
| WBsf221816 | |||||||||
| WBsf221817 | |||||||||
| WBsf221818 | |||||||||
| WBsf221819 | |||||||||
| WBsf221820 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00015079 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00047512 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117193 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032357 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram700 | ||||||||
| Chronogram1027 | |||||||||
| Expr6087 | |||||||||
| Expr6088 | |||||||||
| Expr13597 | |||||||||
| Expr1018655 | |||||||||
| Expr1034277 | |||||||||
| Expr1151351 | |||||||||
| Expr2015300 | |||||||||
| Expr2033534 | |||||||||
| Drives_construct | WBCnstr00004063 | ||||||||
| WBCnstr00004102 | |||||||||
| WBCnstr00031924 | |||||||||
| Construct_product | WBCnstr00008681 | ||||||||
| WBCnstr00008688 | |||||||||
| WBCnstr00021445 | |||||||||
| WBCnstr00031924 | |||||||||
| Antibody | WBAntibody00002662 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (107) | |||||||||
| Interaction (37) | |||||||||
| Map_info | Map | II | Position | 0.901758 | Error | 0.000789 | |||
| Positive | Positive_clone | F46C5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00043011 | |||||||||
| WBPaper00047615 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062289 | |||||||||
| WBPaper00064057 | |||||||||
| WBPaper00064375 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
