WormBase Tree Display for Gene: WBGene00009668
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| WBGene00009668 | SMap | S_parent | Sequence | F43G9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cfim-1 | Person_evidence | WBPerson71 | |||||
| Sequence_name | F43G9.5 | ||||||||
| Molecular_name | F43G9.5 | ||||||||
| F43G9.5.1 | |||||||||
| CE10362 | |||||||||
| Other_name | CELE_F43G9.5 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | cfim-1 | ||||||||
| DB_info | Database | AceView | gene | 1J193 | |||||
| WormQTL | gene | WBGene00009668 | |||||||
| WormFlux | gene | WBGene00009668 | |||||||
| NDB | locus_tag | CELE_F43G9.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009668|UniProtKB=Q93716 | |||||||
| family | PTHR13047 | ||||||||
| NCBI | gene | 172657 | |||||||
| RefSeq | protein | NM_059933.4 | |||||||
| TREEFAM | TREEFAM_ID | TF106356 | |||||||
| TrEMBL | UniProtAcc | Q93716 | |||||||
| UniProt_GCRP | UniProtAcc | Q93716 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 10 Nov 2008 17:10:59 | WBPerson2970 | Name_change | CGC_name | cfim-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cfim | ||||||||
| Allele (15) | |||||||||
| Strain | WBStrain00003006 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (36) | |||||||||
| Structured_description | Concise_description | F43G9.5 encodes a NUDIX hydrolase that that inhibits DHC-1 in vivo, andis a (perhaps evolutionarily conserved) target of transcriptionalactivation by DAF-16; F43G9.5(RNAi) suppresses the lethality ofconditional dhc-1 mutations, as well as the spindle length andcytokinesis defects of dhc-1(or195), indicating that F43G9.5 negativelyregulates dynein; while loss of F43G9.5 function has no obvious effecton lifespan, dauer formation, or fat storage, F43G9.5 is required for embryonic development, fertility, and general health in mass RNAiassays. | Paper_evidence | WBPaper00004210 | |||||
| WBPaper00004651 | |||||||||
| WBPaper00005813 | |||||||||
| WBPaper00030897 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 26 Aug 2007 00:00:00 | ||||||||
| Automated_description | Enables identical protein binding activity. Predicted to be involved in mRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of mRNA cleavage factor complex. Is an ortholog of human NUDT21 (nudix hydrolase 21). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F43G9.5 | |||||||
| Corresponding_transcript | F43G9.5.1 | ||||||||
| Other_sequence (75) | |||||||||
| Associated_feature | WBsf643536 | ||||||||
| WBsf656646 | |||||||||
| WBsf218180 | |||||||||
| Experimental_info | RNAi_result (22) | ||||||||
| Expr_pattern | Chronogram842 | ||||||||
| Chronogram1232 | |||||||||
| Expr6065 | |||||||||
| Expr1027241 | |||||||||
| Expr1034226 | |||||||||
| Expr1151084 | |||||||||
| Expr2009937 | |||||||||
| Expr2028177 | |||||||||
| Drives_construct | WBCnstr00003506 | ||||||||
| WBCnstr00032009 | |||||||||
| Construct_product | WBCnstr00032009 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (131) | |||||||||
| Interaction (117) | |||||||||
| Map_info | Map | I | Position | 2.99721 | Error | 0.00291 | |||
| Positive | Positive_clone | F43G9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006292 | ||||||||
| WBPaper00032289 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063236 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
