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WormBase Tree Display for Gene: WBGene00009653

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Name Class

WBGene00009653SMapS_parentSequenceCHROMOSOME_III
IdentityVersion2
NameCGC_nameptr-25Person_evidenceWBPerson4866
Laboratory_evidenceXMN
Sequence_nameF43D9.1
Molecular_nameF43D9.1
F43D9.1.1
CE32661
Other_nameF43D9.1
CELE_F43D9.1Accession_evidenceNDBBX284603
Public_nameptr-25
DB_infoDatabaseAceViewgene3L589
WormQTLgeneWBGene00009653
WormFluxgeneWBGene00009653
NDBlocus_tagCELE_F43D9.1
PanthergeneCAEEL|WormBase=WBGene00009653|UniProtKB=G5ECF2
familyPTHR10796
NCBIgene176469
RefSeqproteinNM_066912.7
TREEFAMTREEFAM_IDTF321856
TrEMBLUniProtAccG5ECF2
UniProt_GCRPUniProtAccG5ECF2
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
203 Oct 2022 15:59:20WBPerson21950Name_changeCGC_nameptr-25
Other_nameF43D9.1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classptr
Allele (280)
RNASeq_FPKM (74)
GO_annotation00011640
00011641
00011642
00011643
00011644
00011645
00117291
OrthologWBGene00055764Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00037811Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00145071Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00130563Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00224315Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g5188Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2443Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g4851Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g9429Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15303Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g14158Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2616Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13600Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g24405Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g25651Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g8292Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g442Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00817.g14350Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_12407.g23732Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_24112.g27123Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-F43D9.1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold628.g7363Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold628.g7364Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00128.g5102Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_11413Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010460Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g03720Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g13191Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30124500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g8879Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00215142Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00217593Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00218002Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00245838Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00092183Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00263498Strongyloides rattiFrom_analysisWormBase-Compara
Paralog (30)
Structured_descriptionAutomated_descriptionPredicted to be involved in endocytosis and molting cycle. Located in centrosome. Expressed in head neurons; interneuron; and muscle cell.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF43D9.1
Corresponding_transcriptF43D9.1.1
Other_sequenceMA02843
Oden_contig11802
Dviv_isotig34075
Acan_isotig08376
JI168011.1
Associated_feature (16)
Experimental_infoRNAi_resultWBRNAi00014877Inferred_automaticallyRNAi_primary
WBRNAi00007296Inferred_automaticallyRNAi_primary
WBRNAi00032182Inferred_automaticallyRNAi_primary
WBRNAi00047187Inferred_automaticallyRNAi_primary
WBRNAi00002695Inferred_automaticallyRNAi_primary
WBRNAi00083363Inferred_automaticallyRNAi_primary
Expr_patternExpr1248
Expr1249
Expr1028499
Expr1034214
Expr1151048
Expr2003674
Expr2021892
Drives_constructWBCnstr00010172
Construct_productWBCnstr00010172
AntibodyWBAntibody00000366
Microarray_results (19)
Expression_cluster (217)
InteractionWBInteraction000307742
WBInteraction000390470
WBInteraction000420245
WBInteraction000441073
Map_infoMapIIIPosition2.59383
PositivePositive_cloneF43D9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00004698
WBPaper00063946
WBPaper00064376
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene