WormBase Tree Display for Gene: WBGene00009608

WBGene00009608 SMap: S_parent: Sequence: F41D3
  Identity: Version: 2
    Name: CGC_name: nhr-265 Person_evidence: WBPerson600
      Sequence_name: F41D3.3
      Molecular_name: F41D3.3
        F41D3.3.1
        CE16022
      Other_name: CELE_F41D3.3 Accession_evidence: NDB BX284601
      Public_name: nhr-265
    DB_info: Database: AceView gene 1M841
        WormQTL gene WBGene00009608
        WormFlux gene WBGene00009608
        NDB locus_tag CELE_F41D3.3
        Panther gene CAEEL|WormBase=WBGene00009608|UniProtKB=O45507
          family PTHR46397
        NCBI gene 185603
        RefSeq protein NM_060691.2
        TREEFAM TREEFAM_ID TF321941
        TrEMBL UniProtAcc O45507
        UniProt_GCRP UniProtAcc O45507
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 22 Jul 2005 10:29:12 WBPerson2970 Name_change: CGC_name: nhr-265
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele (45)
    RNASeq_FPKM (74)
    GO_annotation: 00034659
      00034660
      00034661
      00034662
      00117245
      00117246
      00117247
      00117248
    Ortholog (19)
    Paralog (225)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F41D3.3
    Corresponding_transcript: F41D3.3.1
    Transcription_factor: WBTranscriptionFactor000531
  Experimental_info: RNAi_result: WBRNAi00092055 Inferred_automatically: RNAi_primary
      WBRNAi00003651 Inferred_automatically: RNAi_primary
      WBRNAi00046976 Inferred_automatically: RNAi_primary
      WBRNAi00113952 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1013200
      Expr1150838
      Expr2014156
      Expr2032400
    Drives_construct: WBCnstr00032061
    Construct_product: WBCnstr00032061
    Microarray_results (17)
    Expression_cluster: WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044760:somatic_specific
      WBPaper00045390:ubc-9(RNAi)_upregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045774:clk-1_upregulated
      WBPaper00045918:96h_infection_recovery_downregulated
      WBPaper00045974:NSM_enriched_totalRNA_tiling
      WBPaper00048611:MnCl2_upregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050412:cco-1(RNAi)_upregulated_met-2(ok2307)
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050801:SET-4_dauer_regulome
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053402:cco-1(RNAi)_upregulated
      WBPaper00053402:his-3(RNAi)_upregulated
      WBPaper00054410:set-26(tm2467)_upregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055013:hmg-4(RNAi)_upregulated
      WBPaper00055013:spt-16(RNAi)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_L2
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056868:P.aeruginosa_upregulated_smallRNA
      WBPaper00057068:numr-1(RNAi)_downregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059426:Ag-nanoparticles_upregulated
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060445:ikb-1(nr2027)_downregulated_L4
      WBPaper00060445:nfki-1(cer1)_downregulated_L4
      WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_downregulated_L4
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061390:N2_ascarosides_downregulated
      WBPaper00061527:C54G4.4-Y45F3A.8
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00064539:nhr-114(gk849)_upregulated
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00065288:mdt-15(tm2182)_upregulated
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00027111:rrf-1(pk1417)_downregulated
      WBPaper00031184:acrylamide_upregulated
      WBPaper00034739:N2lessDR1350
      WBPaper00035560:ahr-1_downregulated
      WBPaper00045294:0.1uM_TBBP_downregulated
      WBPaper00047070:N2_UV_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00055899:nitroguanidine_regulated
    Interaction (33)
  Map_info: Map: I Position: 13.0994 Error: 0.003721
    Positive: Positive_clone: F41D3 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5408
    Pseudo_map_position
  Reference: WBPaper00027309
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene