WormBase Tree Display for Gene: WBGene00009588
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| WBGene00009588 | SMap | S_parent | Sequence | F40F11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F40F11.3 | |||||||
| Molecular_name | F40F11.3a | ||||||||
| F40F11.3a.1 | |||||||||
| CE05862 | |||||||||
| F40F11.3b | |||||||||
| CE48071 | |||||||||
| F40F11.3b.1 | |||||||||
| Other_name | CELE_F40F11.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | F40F11.3 | ||||||||
| DB_info | Database | AceView | gene | 4M354 | |||||
| WormQTL | gene | WBGene00009588 | |||||||
| WormFlux | gene | WBGene00009588 | |||||||
| NDB | locus_tag | CELE_F40F11.3 | |||||||
| NCBI | gene | 185547 | |||||||
| RefSeq | protein | NM_001392401.1 | |||||||
| NM_001276864.3 | |||||||||
| TrEMBL | UniProtAcc | Q20208 | |||||||
| K8ERW1 | |||||||||
| UniProt_GCRP | UniProtAcc | K8ERW1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (23) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (16) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABarpapaaa; ABplaaaaaa; ABplpaaapa; germ line; and neurons based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and daf-12 based on tiling array; RNA-seq; proteomic; and microarray studies. Is affected by twelve chemicals including hydrogen sulfide; rotenone; and levamisole based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: COMPASS (Complex proteins associated with Set1p) component shg1. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F40F11.3a | |||||||
| F40F11.3b | |||||||||
| Corresponding_transcript | F40F11.3a.1 | ||||||||
| F40F11.3b.1 | |||||||||
| Other_sequence | CJC07452_1 | ||||||||
| Associated_feature | WBsf667647 | ||||||||
| WBsf997887 | |||||||||
| WBsf997888 | |||||||||
| WBsf1018232 | |||||||||
| WBsf230896 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00062027 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046851 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032024 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008772 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021462 | ||||||||
| Expr1034198 | |||||||||
| Expr1150722 | |||||||||
| Expr2003529 | |||||||||
| Expr2021746 | |||||||||
| Drives_construct | WBCnstr00032079 | ||||||||
| Construct_product | WBCnstr00032079 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (107) | |||||||||
| Interaction (49) | |||||||||
| Map_info | Positive | Positive_clone | F40F11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | 5.021 | |||||||
| Method | Gene |
