WormBase Tree Display for Gene: WBGene00009575
expand all nodes | collapse all nodes | view schema
| WBGene00009575 | SMap | S_parent | Sequence | F40F8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F40F8.1 | |||||||
| Molecular_name | F40F8.1a | ||||||||
| F40F8.1a.1 | |||||||||
| CE05842 | |||||||||
| F40F8.1b | |||||||||
| CE50470 | |||||||||
| F40F8.1b.1 | |||||||||
| F40F8.1c | |||||||||
| Other_name | CELE_F40F8.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | F40F8.1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (28) | |||||||||
| Strain | WBStrain00001571 | ||||||||
| WBStrain00001613 | |||||||||
| WBStrain00002188 | |||||||||
| WBStrain00002724 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (43) | |||||||||
| Contained_in_operon | CEOP2520 | ||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00002879 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007812 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00008746 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009531 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009543 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00014058 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enables UMP kinase activity. Involved in UDP biosynthetic process. Predicted to be located in cytoplasm and nucleus. Expressed in head and neurons. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Is an ortholog of human CMPK1 (cytidine/uridine monophosphate kinase 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:3908 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18170) | ||||
| Molecular_info | Corresponding_CDS | F40F8.1a | |||||||
| F40F8.1b | |||||||||
| Corresponding_transcript | F40F8.1c | ||||||||
| F40F8.1a.1 | |||||||||
| F40F8.1b.1 | |||||||||
| Other_sequence (44) | |||||||||
| Associated_feature | WBsf034271 | ||||||||
| WBsf658224 | |||||||||
| WBsf658225 | |||||||||
| WBsf222099 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00014662 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014661 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081722 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032035 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061628 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046872 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (12) | |||||||||
| Drives_construct | WBCnstr00002411 | ||||||||
| WBCnstr00002452 | |||||||||
| WBCnstr00004335 | |||||||||
| WBCnstr00013519 | |||||||||
| WBCnstr00032091 | |||||||||
| Construct_product | WBCnstr00032091 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (116) | |||||||||
| SAGE_tag | SAGE:cacaacgtggtttttgt | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:aaagcttgtg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:tcgtttcgag | Strand | Antisense | |||||||
| SAGE:gcattctcga | Strand | Antisense | |||||||
| SAGE:gcattctcgaggaggga | Strand | Antisense | |||||||
| SAGE:cacaacgtgg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aaagcttgtggagatgc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (64) | |||||||||
| Map_info | Positive | Positive_clone | F40F8 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | 3.32242 | |||||||
| Reference | WBPaper00035098 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
