WormBase Tree Display for Gene: WBGene00009523
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| WBGene00009523 | SMap | S_parent | Sequence | F38A1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-165 | Person_evidence | WBPerson2531 | |||||
| Sequence_name | F38A1.10 | ||||||||
| Molecular_name | F38A1.10 | ||||||||
| F38A1.10.1 | |||||||||
| CE10022 | |||||||||
| Other_name | CELE_F38A1.10 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | clec-165 | ||||||||
| DB_info | Database | AceView | gene | 4B998 | |||||
| WormQTL | gene | WBGene00009523 | |||||||
| WormFlux | gene | WBGene00009523 | |||||||
| NDB | locus_tag | CELE_F38A1.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009523|UniProtKB=A4F315 | |||||||
| family | PTHR23062 | ||||||||
| NCBI | gene | 185440 | |||||||
| RefSeq | protein | NM_171256.4 | |||||||
| TREEFAM | TREEFAM_ID | TF317818 | |||||||
| TrEMBL | UniProtAcc | A4F315 | |||||||
| UniProt_GCRP | UniProtAcc | A4F315 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 09 Oct 2007 15:40:27 | WBPerson2970 | Name_change | CGC_name | clec-165 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (62) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (55) | |||||||||
| Paralog (45) | |||||||||
| Structured_description | Automated_description | Enriched in OLL; PVD; and intestine based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and glp-1 based on tiling array; microarray; and RNA-seq studies. Is affected by sixteen chemicals including rotenone; D-glucose; and stavudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F38A1.10 | |||||||
| Corresponding_transcript | F38A1.10.1 | ||||||||
| Other_sequence | FG584368.1 | ||||||||
| Associated_feature | WBsf651645 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00046665 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014520 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046656 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031936 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014512 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031932 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016768 | ||||||||
| Expr1150528 | |||||||||
| Expr2010089 | |||||||||
| Expr2028331 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (135) | |||||||||
| Interaction | WBInteraction000291860 | ||||||||
| WBInteraction000335787 | |||||||||
| WBInteraction000373588 | |||||||||
| WBInteraction000383608 | |||||||||
| WBInteraction000393191 | |||||||||
| WBInteraction000397642 | |||||||||
| Map_info | Map | IV | Position | -20.995 | Error | 0.043445 | |||
| Positive | Positive_clone | F38A1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031686 | ||||||||
| WBPaper00062585 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
