WormBase Tree Display for Gene: WBGene00009353
expand all nodes | collapse all nodes | view schema
| WBGene00009353 | SMap | S_parent | Sequence | F33A8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sdhd-1 | Person_evidence | WBPerson205 | |||||
| Sequence_name | F33A8.5 | ||||||||
| Molecular_name | F33A8.5 | ||||||||
| F33A8.5.1 | |||||||||
| CE17757 | |||||||||
| Other_name | CELE_F33A8.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | sdhd-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 19 Jul 2006 13:38:53 | WBPerson2970 | Name_change | CGC_name | sdhd-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sdhd | ||||||||
| Allele (20) | |||||||||
| Strain | WBStrain00002911 | ||||||||
| WBStrain00033449 | |||||||||
| WBStrain00033443 | |||||||||
| WBStrain00033437 | |||||||||
| WBStrain00033457 | |||||||||
| WBStrain00033460 | |||||||||
| WBStrain00033463 | |||||||||
| WBStrain00051083 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Contained_in_operon | CEOP2512 | ||||||||
| Ortholog (38) | |||||||||
| Structured_description | Concise_description | F33A8.5 is orthologous to the human gene SUCCINATE DEHYDROGENASE COMPLEX, SUBUNIT D, INTEGRAL MEMBRANE PROTEIN (SDHD; OMIM:602690), which when mutated leads to disease. | Curator_confirmed | WBPerson1823 | |||||
| WBPerson567 | |||||||||
| Date_last_updated | 06 Aug 2004 00:00:00 | ||||||||
| Automated_description | Contributes to succinate dehydrogenase (ubiquinone) activity. Predicted to be involved in mitochondrial electron transport, succinate to ubiquinone and tricarboxylic acid cycle. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone). Human ortholog(s) of this gene implicated in Carney-Stratakis syndrome; mitochondrial complex II deficiency; and paraganglioma. Is an ortholog of human SDHD (succinate dehydrogenase complex subunit D). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060537 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10683) | ||||
| DOID:0080533 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10683) | ||||||
| DOID:0050773 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10683) | ||||||
| Molecular_info | Corresponding_CDS | F33A8.5 | |||||||
| Corresponding_transcript | F33A8.5.1 | ||||||||
| Other_sequence (60) | |||||||||
| Associated_feature | WBsf650542 | ||||||||
| WBsf223882 | |||||||||
| WBsf223883 | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Chronogram1799 | ||||||||
| Expr5940 | |||||||||
| Expr1013665 | |||||||||
| Expr1034092 | |||||||||
| Expr1150069 | |||||||||
| Expr2015665 | |||||||||
| Expr2033898 | |||||||||
| Drives_construct | WBCnstr00003424 | ||||||||
| WBCnstr00032261 | |||||||||
| Construct_product | WBCnstr00032261 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (99) | |||||||||
| Interaction (83) | |||||||||
| Map_info | Map | II | Position | 3.16067 | Error | 0.001283 | |||
| Positive | Positive_clone | F33A8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025130 | ||||||||
| WBPaper00031194 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040490 | |||||||||
| WBPaper00047026 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
