WormBase Tree Display for Gene: WBGene00009340

WBGene00009340 SMap: S_parent: Sequence: F32G8
  Identity: Version: 2
    Name: CGC_name: best-14 Person_evidence: WBPerson260
      Sequence_name: F32G8.4
      Molecular_name (3)
      Other_name: CELE_F32G8.4 Accession_evidence: NDB BX284605
      Public_name: best-14
    DB_info: Database: AceView gene 5L39
        WormQTL gene WBGene00009340
        WormFlux gene WBGene00009340
        NDB locus_tag CELE_F32G8.4
        Panther gene CAEEL|WormBase=WBGene00009340|UniProtKB=Q19978
          family PTHR10736
        NCBI gene 179471
        RefSeq protein NM_073307.6
        SwissProt UniProtAcc Q19978
        UniProt_GCRP UniProtAcc Q19978
        OMIM gene 607854
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 07 Feb 2012 16:30:56 WBPerson2970 Name_change: CGC_name: best-14
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: best
    Allele (34)
    RNASeq_FPKM (74)
    GO_annotation: 00066569
      00066570
      00066571
      00066572
      00066573
      00117059
    Ortholog: WBGene00031197 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00065044 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00160215 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00120855 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00116036 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00153889 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00224034 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g366 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g3169 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g3170 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g300 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4449 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17975 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g7417 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g483 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g9823 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g9824 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g22984 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g8697 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g1490 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00580.g12443 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00580.g12444 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_19358.g26223 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_20100.g26386 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-best-14 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g15523 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00522.g12419 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_11788 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_016433 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g00161 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g10845 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50294810 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g15552 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243759 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00264416 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00289242 Trichuris muris From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-070912-6 Danio rerio From_analysis: OMA
            OrthoFinder
            Panther
            PhylomeDB
      HGNC:12703 Homo sapiens From_analysis: OrthoFinder
            Panther
            PhylomeDB
      HGNC:17107 Homo sapiens From_analysis: OrthoFinder
            Panther
            PhylomeDB
      HGNC:17105 Homo sapiens From_analysis: OrthoFinder
            Panther
            PhylomeDB
      HGNC:17106 Homo sapiens From_analysis: OrthoFinder
            Panther
            PhylomeDB
      MGI:1346332 Mus musculus From_analysis: OrthoFinder
            Panther
            PhylomeDB
      MGI:2387588 Mus musculus From_analysis: OrthoFinder
            Panther
            PhylomeDB
      MGI:3580298 Mus musculus From_analysis: OrthoFinder
            Panther
            PhylomeDB
      RGD:1311656 Rattus norvegicus From_analysis: OrthoFinder
            Panther
            PhylomeDB
      RGD:1305439 Rattus norvegicus From_analysis: OrthoFinder
            Panther
            PhylomeDB
      RGD:1305377 Rattus norvegicus From_analysis: OrthoFinder
            Panther
            PhylomeDB
      RGD:1596200 Rattus norvegicus From_analysis: OrthoFinder
            Panther
            PhylomeDB
    Paralog (26)
    Structured_description: Automated_description: Predicted to enable chloride channel activity. Predicted to be involved in chloride transmembrane transport. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in autosomal dominant vitreoretinochoroidopathy and retinal degeneration (multiple). Is an ortholog of several human genes including BEST1 (bestrophin 1); BEST2 (bestrophin 2); and BEST3 (bestrophin 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0110396 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:12703)
      DOID:4448 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:12703)
      DOID:0050661 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:12703)
      DOID:0050662 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:12703)
      DOID:0111569 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:12703)
  Molecular_info: Corresponding_CDS: F32G8.4
    Corresponding_CDS_history: F32G8.4:wp137
    Corresponding_transcript: F32G8.4.1
    Other_sequence (30)
    Associated_feature: WBsf647175
      WBsf1001138
      WBsf232393
  Experimental_info: RNAi_result: WBRNAi00046155 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014649
      Expr1034085
      Expr1150043
      Expr2009596
      Expr2027833
    Drives_construct: WBCnstr00032271
    Construct_product: WBCnstr00032271
    Microarray_results (20)
    Expression_cluster (192)
    Interaction: WBInteraction000293785
      WBInteraction000321039
      WBInteraction000443493
      WBInteraction000551616
      WBInteraction000567996
  Map_info: Map: V Position: 2.59073
    Positive: Positive_clone: F32G8 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene