WormBase Tree Display for Gene: WBGene00009112

WBGene00009112 SMap: S_parent: Sequence: F25D7
  Identity: Version: 2
    Name: CGC_name: tag-353
      Sequence_name: F25D7.2
      Molecular_name: F25D7.2
        F25D7.2.1
        CE40045
      Other_name: CELE_F25D7.2 Accession_evidence: NDB BX284601
      Public_name: tag-353
    DB_info: Database: AceView gene 1K977
        WormQTL gene WBGene00009112
        WormFlux gene WBGene00009112
        NDB locus_tag CELE_F25D7.2
        Panther gene CAEEL|WormBase=WBGene00009112|UniProtKB=Q93559
          family PTHR12943
        NCBI gene 172916
        RefSeq protein NM_060321.7
        TREEFAM TREEFAM_ID TF324319
        TrEMBL UniProtAcc Q93559
        UniProt_GCRP UniProtAcc Q93559
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 21 Jun 2005 10:02:25 WBPerson2970 Name_change: CGC_name: tag-353
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tag
    Allele (26)
    Strain: WBStrain00036267
    RNASeq_FPKM (74)
    GO_annotation: 00086113
      00086114
      00086115
      00105797
    Ortholog (35)
    Structured_description: Automated_description: Acts upstream of or within IRE1-mediated unfolded protein response. Predicted to be located in membrane. Is an ortholog of human HERPUD2 (HERPUD family member 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F25D7.2
    Corresponding_CDS_history: F25D7.2:wp156
    Corresponding_transcript: F25D7.2.1
    Other_sequence (27)
    Associated_feature (14)
  Experimental_info: RNAi_result: WBRNAi00003445 Inferred_automatically: RNAi_primary
      WBRNAi00045491 Inferred_automatically: RNAi_primary
      WBRNAi00075791 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1024369
      Expr1033967
      Expr1149410
      Expr2017281
      Expr2035416
    Drives_construct: WBCnstr00032455
    Construct_product: WBCnstr00032455
    Microarray_results (19)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032097:CGH-1-associated-mRNA
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00046509:htz-1(ok3099)_upregulated
      WBPaper00048762:FOG-3_associated
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_3
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:zidovudine_24h_regulated
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056165:MINA-1_interacting_mRNA
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:set-2(bn129)_downregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060951:mrpl-2(osa3)_upregulated
      WBPaper00061007:HB101_downregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061203:let-418(n3536)_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061527:lst-4_22151-F46F11.6_12556
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:etr-1(lq61)_downregulated
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064716:paraquat_upregulated
      WBPaper00064871:hypoxia_upregulated_F1
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065373:sek-1(km4)_upregulated_Ref
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      cgc4386_cluster_4_3
      WBPaper00025032:cluster_4
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00035084:embryo_enriched_AIN-2_IP
      WBPaper00035084:L4_enriched_AIN-2_IP
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Cadmium_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      [cgc5767]:cluster_9
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
      [cgc6390]:Cluster_F
    Interaction (20)
  Map_info: Map: I Position: 4.9771 Error: 0.003298
    Positive: Positive_clone: F25D7 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5301
    Pseudo_map_position
  Reference: WBPaper00026830
    WBPaper00031865
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene