WormBase Tree Display for Gene: WBGene00008990
expand all nodes | collapse all nodes | view schema
| WBGene00008990 | SMap | S_parent | Sequence | F20G4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | smgl-1 | Paper_evidence | WBPaper00029295 | |||||
| Person_evidence | WBPerson297 | ||||||||
| Sequence_name | F20G4.1 | ||||||||
| Molecular_name | F20G4.1 | ||||||||
| F20G4.1.1 | |||||||||
| CE34296 | |||||||||
| F20G4.1.2 | |||||||||
| Other_name | CELE_F20G4.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | smgl-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 11 May 2007 11:55:05 | WBPerson2970 | Name_change | CGC_name | smgl-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | smgl | ||||||||
| Allele (83) | |||||||||
| Strain | WBStrain00037717 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00049224 | ||||||||
| 00049225 | |||||||||
| 00049226 | |||||||||
| 00049227 | |||||||||
| Contained_in_operon | CEOP1432 | ||||||||
| Ortholog (35) | |||||||||
| Structured_description | Automated_description | Predicted to enable SNARE binding activity. Involved in nuclear-transcribed mRNA catabolic process. Predicted to be part of Dsl1/NZR complex. Human ortholog(s) of this gene implicated in infantile liver failure syndrome. Is an ortholog of human NBAS (NBAS subunit of NRZ tethering complex). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080716 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15625) | ||||
| Molecular_info | Corresponding_CDS | F20G4.1 | |||||||
| Corresponding_CDS_history | F20G4.1:wp103 | ||||||||
| Corresponding_transcript | F20G4.1.1 | ||||||||
| F20G4.1.2 | |||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf649353 | ||||||||
| WBsf219836 | |||||||||
| WBsf219837 | |||||||||
| WBsf219838 | |||||||||
| Experimental_info | RNAi_result (19) | ||||||||
| Expr_pattern | Chronogram681 | ||||||||
| Chronogram701 | |||||||||
| Expr5809 | |||||||||
| Expr5810 | |||||||||
| Expr16220 | |||||||||
| Expr1015643 | |||||||||
| Expr1033913 | |||||||||
| Expr1149086 | |||||||||
| Expr2015916 | |||||||||
| Expr2034149 | |||||||||
| Drives_construct | WBCnstr00004079 | ||||||||
| WBCnstr00004104 | |||||||||
| WBCnstr00032540 | |||||||||
| Construct_product | WBCnstr00016551 | ||||||||
| WBCnstr00032540 | |||||||||
| Regulate_expr_cluster | WBPaper00042561:smgl-1(RNAi)_downregulated | ||||||||
| WBPaper00042561:smgl-1(RNAi)_upregulated | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (96) | |||||||||
| Interaction (12) | |||||||||
| Map_info | Map | I | Position | 2.39872 | Error | 0.004103 | |||
| Positive | Positive_clone | F20G4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029295 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040293 | |||||||||
| WBPaper00042601 | |||||||||
| WBPaper00046507 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064057 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00066210 | |||||||||
| WBPaper00066240 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
