WormBase Tree Display for Gene: WBGene00008971
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| WBGene00008971 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F20C5.6 | |||||||
| Molecular_name | F20C5.6 | ||||||||
| F20C5.6.1 | |||||||||
| CE52919 | |||||||||
| Other_name | CELE_F20C5.6 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | F20C5.6 | ||||||||
| DB_info | Database | AceView | gene | 4J536 | |||||
| WormQTL | gene | WBGene00008971 | |||||||
| WormFlux | gene | WBGene00008971 | |||||||
| NDB | locus_tag | CELE_F20C5.6 | |||||||
| NCBI | gene | 177687 | |||||||
| RefSeq | protein | NM_069112.7 | |||||||
| TREEFAM | TREEFAM_ID | TF351173 | |||||||
| TrEMBL | UniProtAcc | G5EFF2 | |||||||
| UniProt_GCRP | UniProtAcc | G5EFF2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (26) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00018040 | ||||||||
| 00018041 | |||||||||
| Contained_in_operon | CEOP4308 | ||||||||
| Ortholog | chrIV_pilon.g11157 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Paralog | WBGene00007900 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00007901 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00194651 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Automated_description | Enriched in several structures, including ABalaaaala; ABalaapaaa; ABplpaaaaa; neurons; and ventral nerve cord based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and sir-2.1 based on microarray; RNA-seq; and tiling array studies. Is affected by twenty-four chemicals including 1-methylnicotinamide; rotenone; and bisphenol S based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F20C5.6 | |||||||
| Corresponding_CDS_history | F20C5.6:wp268 | ||||||||
| Corresponding_transcript | F20C5.6.1 | ||||||||
| Other_sequence | MH05645 | ||||||||
| Associated_feature | WBsf230468 | ||||||||
| WBsf230469 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00031164 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00013609 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076319 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045091 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1014175 | ||||||||
| Expr1033904 | |||||||||
| Expr1149040 | |||||||||
| Expr2002777 | |||||||||
| Expr2020995 | |||||||||
| Drives_construct | WBCnstr00032557 | ||||||||
| Construct_product | WBCnstr00032557 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (220) | |||||||||
| Interaction | WBInteraction000030604 | ||||||||
| WBInteraction000030697 | |||||||||
| WBInteraction000030907 | |||||||||
| WBInteraction000032089 | |||||||||
| WBInteraction000384462 | |||||||||
| WBInteraction000414122 | |||||||||
| WBInteraction000508177 | |||||||||
| WBInteraction000508178 | |||||||||
| WBInteraction000508180 | |||||||||
| WBInteraction000508185 | |||||||||
| WBInteraction000508188 | |||||||||
| WBInteraction000508191 | |||||||||
| WBInteraction000510137 | |||||||||
| WBInteraction000510146 | |||||||||
| WBInteraction000510148 | |||||||||
| WBInteraction000510167 | |||||||||
| WBInteraction000510204 | |||||||||
| WBInteraction000510207 | |||||||||
| WBInteraction000510221 | |||||||||
| WBInteraction000510222 | |||||||||
| WBInteraction000510226 | |||||||||
| WBInteraction000510252 | |||||||||
| WBInteraction000510256 | |||||||||
| WBInteraction000510261 | |||||||||
| WBInteraction000510268 | |||||||||
| WBInteraction000510269 | |||||||||
| WBInteraction000510754 | |||||||||
| WBInteraction000510846 | |||||||||
| WBInteraction000516785 | |||||||||
| WBInteraction000546987 | |||||||||
| WBInteraction000547411 | |||||||||
| WBInteraction000547640 | |||||||||
| WBInteraction000547857 | |||||||||
| WBInteraction000580623 | |||||||||
| Map_info | Positive | Positive_clone | F20C5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | 3.96138 | |||||||
| Method | Gene |
