WormBase Tree Display for Gene: WBGene00008781
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| WBGene00008781 | SMap | S_parent | Sequence | F14B4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rpoa-2 | Person_evidence | WBPerson10054 | |||||
| Sequence_name | F14B4.3 | ||||||||
| Molecular_name | F14B4.3 | ||||||||
| F14B4.3.1 | |||||||||
| CE05629 | |||||||||
| Other_name | CELE_F14B4.3 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | rpoa-2 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 28 Sep 2012 14:29:00 | WBPerson2970 | Name_change | CGC_name | rpoa-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpoa | ||||||||
| Allele (63) | |||||||||
| Strain | WBStrain00002697 | ||||||||
| WBStrain00037291 | |||||||||
| WBStrain00040526 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00016140 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00017300 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA binding activity; DNA-directed 5'-3' RNA polymerase activity; and ribonucleoside binding activity. Predicted to contribute to RNA polymerase I activity. Predicted to be involved in transcription by RNA polymerase I. Located in nucleolus. Expressed in several structures, including intestine. Human ortholog(s) of this gene implicated in Treacher Collins syndrome 4. Is an ortholog of human POLR1B (RNA polymerase I subunit B). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080792 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20454) | ||||
| Molecular_info | Corresponding_CDS | F14B4.3 | |||||||
| Corresponding_transcript | F14B4.3.1 | ||||||||
| Other_sequence (43) | |||||||||
| Associated_feature | WBsf649458 | ||||||||
| WBsf664699 | |||||||||
| WBsf664700 | |||||||||
| WBsf664701 | |||||||||
| WBsf984638 | |||||||||
| WBsf984639 | |||||||||
| WBsf1010341 | |||||||||
| WBsf1010342 | |||||||||
| WBsf220066 | |||||||||
| WBsf220067 | |||||||||
| Experimental_info | RNAi_result (24) | ||||||||
| Expr_pattern | Chronogram573 | ||||||||
| Expr5754 | |||||||||
| Expr11399 | |||||||||
| Expr1015934 | |||||||||
| Expr1033834 | |||||||||
| Expr1148526 | |||||||||
| Expr2015500 | |||||||||
| Expr2033735 | |||||||||
| Drives_construct | WBCnstr00003239 | ||||||||
| WBCnstr00018640 | |||||||||
| WBCnstr00018641 | |||||||||
| WBCnstr00032692 | |||||||||
| Construct_product | WBCnstr00018640 | ||||||||
| WBCnstr00018641 | |||||||||
| WBCnstr00018642 | |||||||||
| WBCnstr00032692 | |||||||||
| Regulate_expr_cluster | WBPaper00065945:epidermis-rpoa-2(-)_downregulated_protein | ||||||||
| WBPaper00065945:epidermis-rpoa-2(-)_downregulated_transcript | |||||||||
| WBPaper00065945:epidermis-rpoa-2(-)_upregulated_protein | |||||||||
| WBPaper00065945:epidermis-rpoa-2(-)_upregulated_transcript | |||||||||
| WBPaper00065945:global-rpoa-2(-)_downregulated_transcript | |||||||||
| WBPaper00065945:global-rpoa-2(-)_upregulated_transcript | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (148) | |||||||||
| Interaction (326) | |||||||||
| Map_info | Map | I | Position | 3.72796 | |||||
| Positive | Positive_clone | F14B4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029435 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00044530 | |||||||||
| WBPaper00046427 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00065012 | |||||||||
| WBPaper00065945 | |||||||||
| WBPaper00065957 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
