WormBase Tree Display for Gene: WBGene00008628
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WBGene00008628 | SMap | S_parent | Sequence | F09F3 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | ttr-21 | |||||
Sequence_name | F09F3.6 | ||||||
Molecular_name | F09F3.6 | ||||||
F09F3.6.1 | |||||||
CE09289 | |||||||
Other_name | CELE_F09F3.6 | Accession_evidence | NDB | BX284605 | |||
Public_name | ttr-21 | ||||||
DB_info | Database | AceView | gene | 5O334 | |||
WormQTL | gene | WBGene00008628 | |||||
WormFlux | gene | WBGene00008628 | |||||
NDB | locus_tag | CELE_F09F3.6 | |||||
Panther | gene | CAEEL|WormBase=WBGene00008628|UniProtKB=O17776 | |||||
family | PTHR21700 | ||||||
NCBI | gene | 184253 | |||||
RefSeq | protein | NM_074032.9 | |||||
TREEFAM | TREEFAM_ID | TF315773 | |||||
TrEMBL | UniProtAcc | O17776 | |||||
UniProt_GCRP | UniProtAcc | O17776 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | ttr | ||||||
Allele (13) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00030673 | ||||||
00030674 | |||||||
00030675 | |||||||
00116508 | |||||||
Ortholog (20) | |||||||
Paralog (62) | |||||||
Structured_description | Automated_description | Involved in defense response to Gram-negative bacterium. Predicted to be located in cell surface and extracellular region. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F09F3.6 | |||||
Corresponding_transcript | F09F3.6.1 | ||||||
Other_sequence | CSC00093_1 | ||||||
FD514465.1 | |||||||
FD514863.1 | |||||||
Associated_feature | WBsf653349 | ||||||
WBsf979088 | |||||||
WBsf234874 | |||||||
Experimental_info | RNAi_result | WBRNAi00012996 | Inferred_automatically | RNAi_primary | |||
WBRNAi00030719 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00092240 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00044149 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1019224 | ||||||
Expr1148117 | |||||||
Expr2017586 | |||||||
Expr2035725 | |||||||
Drives_construct | WBCnstr00032817 | ||||||
Construct_product | WBCnstr00032817 | ||||||
Microarray_results | SMD_F09F3.6 | ||||||
190996_at | |||||||
A_12_P101018 | |||||||
Aff_F09F3.6 | |||||||
GPL13394_WBGene00008628 | |||||||
GPL13914_F09F3.6 | |||||||
GPL14144_F09F3.6_214-273_0.946_3_B | |||||||
GPL14144_F09F3.6_316-375_0.963_1_A | |||||||
GPL14144_F09F3.6_56-115_0.941_5_C | |||||||
GPL19516_CGZ0015177 | |||||||
GPL21109_F09F3.6 | |||||||
GPL3518_CE09289 | |||||||
GPL8304_CE_WBGene00008628_A | |||||||
GPL8673_F09F3_6P00080 | |||||||
GPL8673_F09F3_6P00141 | |||||||
GPL8673_F09F3_6P00317 | |||||||
GPL9450_F09F3.6 | |||||||
cea2.c.35163 | |||||||
Expression_cluster (218) | |||||||
Interaction | WBInteraction000168785 | ||||||
WBInteraction000207916 | |||||||
WBInteraction000253713 | |||||||
WBInteraction000257788 | |||||||
WBInteraction000261484 | |||||||
WBInteraction000282361 | |||||||
WBInteraction000314760 | |||||||
WBInteraction000319237 | |||||||
WBInteraction000326417 | |||||||
WBInteraction000342249 | |||||||
WBInteraction000344778 | |||||||
WBInteraction000369264 | |||||||
WBInteraction000384819 | |||||||
WBInteraction000386087 | |||||||
WBInteraction000403132 | |||||||
WBInteraction000409998 | |||||||
WBInteraction000416301 | |||||||
WBInteraction000418814 | |||||||
WBInteraction000419428 | |||||||
WBInteraction000504184 | |||||||
WBInteraction000505311 | |||||||
Map_info | Map | V | Position | 5.69187 | Error | 0.0004 | |
Positive | Positive_clone | F09F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00050183 | ||||||
WBPaper00058665 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |