WormBase Tree Display for Gene: WBGene00008628

WBGene00008628 SMap: S_parent: Sequence: F09F3
  Identity: Version: 2
    Name: CGC_name: ttr-21
      Sequence_name: F09F3.6
      Molecular_name: F09F3.6
        F09F3.6.1
        CE09289
      Other_name: CELE_F09F3.6 Accession_evidence: NDB BX284605
      Public_name: ttr-21
    DB_info: Database: AceView gene 5O334
        WormQTL gene WBGene00008628
        WormFlux gene WBGene00008628
        NDB locus_tag CELE_F09F3.6
        Panther gene CAEEL|WormBase=WBGene00008628|UniProtKB=O17776
          family PTHR21700
        NCBI gene 184253
        RefSeq protein NM_074032.9
        TREEFAM TREEFAM_ID TF315773
        TrEMBL UniProtAcc O17776
        UniProt_GCRP UniProtAcc O17776
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 20 Sep 2007 11:48:01 WBPerson2970 Name_change: CGC_name: ttr-21
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ttr
    Allele (13)
    RNASeq_FPKM (74)
    GO_annotation: 00030673
      00030674
      00030675
      00116508
    Ortholog: WBGene00119619 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00032578 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00052896 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00150523 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g1611 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g10011 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g18541 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g8003 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g2302 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g10078 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g24718 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g7660 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cnig_chr_V.g16379 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g14154 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_03271.g29627 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_03732 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_018666 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_50169400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      Sp34_50169500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g16346 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (62)
    Structured_description: Automated_description: Involved in defense response to Gram-negative bacterium. Predicted to be located in cell surface and extracellular region. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F09F3.6
    Corresponding_transcript: F09F3.6.1
    Other_sequence: CSC00093_1
      FD514465.1
      FD514863.1
    Associated_feature: WBsf653349
      WBsf979088
      WBsf234874
  Experimental_info: RNAi_result: WBRNAi00012996 Inferred_automatically: RNAi_primary
      WBRNAi00030719 Inferred_automatically: RNAi_primary
      WBRNAi00092240 Inferred_automatically: RNAi_primary
      WBRNAi00044149 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1019224
      Expr1148117
      Expr2017586
      Expr2035725
    Drives_construct: WBCnstr00032817
    Construct_product: WBCnstr00032817
    Microarray_results (18)
    Expression_cluster (218)
    Interaction (21)
  Map_info: Map: V Position: 5.69187 Error: 0.0004
    Positive: Positive_clone: F09F3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00050183
    WBPaper00058665
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene