WormBase Tree Display for Gene: WBGene00008618
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| WBGene00008618 | SMap | S_parent | Sequence | F09C6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fbxa-45 | Person_evidence | WBPerson655 | |||||
| Sequence_name | F09C6.6 | ||||||||
| Molecular_name | F09C6.6 | ||||||||
| F09C6.6.1 | |||||||||
| CE15765 | |||||||||
| Other_name | CELE_F09C6.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | fbxa-45 | ||||||||
| DB_info | Database | AceView | gene | 5R378 | |||||
| WormQTL | gene | WBGene00008618 | |||||||
| WormFlux | gene | WBGene00008618 | |||||||
| NDB | locus_tag | CELE_F09C6.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008618|UniProtKB=O45333 | |||||||
| family | PTHR23015 | ||||||||
| NCBI | gene | 184233 | |||||||
| RefSeq | protein | NM_074869.1 | |||||||
| TREEFAM | TREEFAM_ID | TF322006 | |||||||
| TrEMBL | UniProtAcc | O45333 | |||||||
| UniProt_GCRP | UniProtAcc | O45333 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-45 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fbxa | ||||||||
| Allele (51) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (40) | |||||||||
| Paralog (225) | |||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Is affected by several genes including clk-1; cyc-1; and ahr-1 based on microarray; tiling array; and RNA-seq studies. Is affected by fluoranthene based on microarray studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F09C6.6 | |||||||
| Corresponding_transcript | F09C6.6.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00012963 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00044103 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020838 | ||||||||
| Expr1148071 | |||||||||
| Expr2029785 | |||||||||
| Drives_construct | WBCnstr00032825 | ||||||||
| Construct_product | WBCnstr00032825 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (29) | |||||||||
| Interaction | WBInteraction000240986 | ||||||||
| WBInteraction000289924 | |||||||||
| WBInteraction000315970 | |||||||||
| WBInteraction000331538 | |||||||||
| WBInteraction000344975 | |||||||||
| WBInteraction000415396 | |||||||||
| WBInteraction000438679 | |||||||||
| WBInteraction000444074 | |||||||||
| WBInteraction000452046 | |||||||||
| Map_info | Map | V | Position | 11.3091 | |||||
| Positive | Positive_clone | F09C6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00012854 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
