WormBase Tree Display for Gene: WBGene00008616
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| WBGene00008616 | SMap | S_parent | Sequence | F09C6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fbxa-44 | Person_evidence | WBPerson655 | |||||
| Sequence_name | F09C6.2 | ||||||||
| Molecular_name | F09C6.2 | ||||||||
| F09C6.2.1 | |||||||||
| CE38321 | |||||||||
| Other_name | CELE_F09C6.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | fbxa-44 | ||||||||
| DB_info | Database | AceView | gene | 5R373 | |||||
| WormQTL | gene | WBGene00008616 | |||||||
| WormFlux | gene | WBGene00008616 | |||||||
| NDB | locus_tag | CELE_F09C6.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008616|UniProtKB=O45329 | |||||||
| family | PTHR23015 | ||||||||
| NCBI | gene | 184231 | |||||||
| RefSeq | protein | NM_074866.3 | |||||||
| TREEFAM | TREEFAM_ID | TF322360 | |||||||
| TrEMBL | UniProtAcc | O45329 | |||||||
| UniProt_GCRP | UniProtAcc | O45329 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-44 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fbxa | ||||||||
| Allele | WBVar02122255 | ||||||||
| WBVar02124833 | |||||||||
| WBVar01464380 | |||||||||
| WBVar01499524 | |||||||||
| WBVar01499525 | |||||||||
| WBVar01843666 | |||||||||
| WBVar01843667 | |||||||||
| WBVar02124497 | |||||||||
| WBVar00043180 | |||||||||
| WBVar00043185 | |||||||||
| WBVar01498290 | |||||||||
| WBVar02122686 | |||||||||
| WBVar02122326 | |||||||||
| WBVar02124908 | |||||||||
| WBVar01909075 | |||||||||
| WBVar01909076 | |||||||||
| WBVar01747721 | |||||||||
| WBVar01747722 | |||||||||
| WBVar01747723 | |||||||||
| WBVar00482293 | |||||||||
| WBVar01747724 | |||||||||
| WBVar01747725 | |||||||||
| WBVar00482294 | |||||||||
| WBVar01747726 | |||||||||
| WBVar01747727 | |||||||||
| WBVar01809658 | |||||||||
| WBVar02121796 | |||||||||
| WBVar01747728 | |||||||||
| WBVar01747729 | |||||||||
| WBVar01747730 | |||||||||
| WBVar01747731 | |||||||||
| WBVar01747732 | |||||||||
| WBVar01747733 | |||||||||
| WBVar01747734 | |||||||||
| WBVar01747735 | |||||||||
| WBVar01747736 | |||||||||
| WBVar01747737 | |||||||||
| WBVar01747738 | |||||||||
| WBVar01747739 | |||||||||
| WBVar01635740 | |||||||||
| WBVar01747740 | |||||||||
| WBVar01747741 | |||||||||
| WBVar01635741 | |||||||||
| WBVar01635742 | |||||||||
| WBVar01747742 | |||||||||
| WBVar01747743 | |||||||||
| WBVar01779581 | |||||||||
| WBVar01747744 | |||||||||
| WBVar01747745 | |||||||||
| WBVar01779582 | |||||||||
| WBVar01747746 | |||||||||
| WBVar01779583 | |||||||||
| WBVar01779584 | |||||||||
| WBVar01779585 | |||||||||
| WBVar01594182 | |||||||||
| WBVar01499446 | |||||||||
| WBVar01498710 | |||||||||
| WBVar01594183 | |||||||||
| WBVar01594184 | |||||||||
| WBVar01991521 | |||||||||
| WBVar02121638 | |||||||||
| WBVar02123303 | |||||||||
| WBVar01083349 | |||||||||
| WBVar01083350 | |||||||||
| WBVar01083351 | |||||||||
| WBVar01083352 | |||||||||
| WBVar01083353 | |||||||||
| WBVar01083354 | |||||||||
| WBVar01083355 | |||||||||
| WBVar01083356 | |||||||||
| WBVar01498549 | |||||||||
| WBVar01083357 | |||||||||
| WBVar01083358 | |||||||||
| WBVar02124059 | |||||||||
| WBVar02123141 | |||||||||
| WBVar01499299 | |||||||||
| WBVar01652716 | |||||||||
| WBVar02124430 | |||||||||
| WBVar01652717 | |||||||||
| WBVar02124626 | |||||||||
| WBVar02123708 | |||||||||
| WBVar02124269 | |||||||||
| WBVar00594612 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (18) | |||||||||
| Paralog (222) | |||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in pharyngeal muscle cell based on tiling array studies. Is affected by several genes including daf-16; daf-12; and eat-2 based on RNA-seq; tiling array; and microarray studies. Is affected by nine chemicals including methylmercuric chloride; multi-walled carbon nanotube; and tert-Butylhydroperoxide based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed (2) | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F09C6.2 | |||||||
| Corresponding_CDS_history | F09C6.2:wp141 | ||||||||
| Corresponding_transcript | F09C6.2.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00012959 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00044097 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030698 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016275 | ||||||||
| Expr1148069 | |||||||||
| Expr2011547 | |||||||||
| Expr2029784 | |||||||||
| Drives_construct | WBCnstr00032826 | ||||||||
| Construct_product | WBCnstr00032826 | ||||||||
| Microarray_results (12) | |||||||||
| Expression_cluster (89) | |||||||||
| Interaction | WBInteraction000280154 | ||||||||
| Map_info | Map | V | Position | 11.2619 | Error | 0.003005 | |||
| Positive | Positive_clone | F09C6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00012854 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
