WormBase Tree Display for Gene: WBGene00008493
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| WBGene00008493 | SMap | S_parent | Sequence | F01D5 | ||
|---|---|---|---|---|---|---|
| Identity (6) | ||||||
| Gene_info | Biotype | SO:0001217 | ||||
| Allele (13) | ||||||
| RNASeq_FPKM (74) | ||||||
| Ortholog | WBGene00124497 | Caenorhabditis japonica | From_analysis | OMA | ||
| TreeFam | ||||||
| WBGene00039732 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||
| OMA | ||||||
| Inparanoid_8 | ||||||
| WormBase-Compara | ||||||
| WBGene00146112 | Caenorhabditis brenneri | From_analysis | OMA | |||
| Inparanoid_8 | ||||||
| WormBase-Compara | ||||||
| CSP40.g5614 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | |||
| Cni-F01D5.3 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | |||
| Csp11.Scaffold630.g19489 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | |||
| Csp5_scaffold_00020.g1208 | Caenorhabditis sinica | From_analysis | WormBase-Compara | |||
| chrII_pilon.g6465 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
| WBGene00092346 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| Paralog (60) | ||||||
| Structured_description | Automated_description | Enriched in intestine based on tiling array and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by thirty chemicals including rotenone; Tunicamycin; and Rifampin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: ShK domain-like and ShKT domain. | Paper_evidence | WBPaper00065943 | ||
| Curator_confirmed | WBPerson324 | |||||
| WBPerson37462 | ||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||
| Molecular_info | Corresponding_CDS | F01D5.2 | ||||
| Corresponding_transcript | F01D5.2.1 | |||||
| Associated_feature | WBsf990576 | |||||
| WBsf224235 | ||||||
| Experimental_info | RNAi_result | WBRNAi00012725 | Inferred_automatically | RNAi_primary | ||
| WBRNAi00103250 | Inferred_automatically | RNAi_primary | ||||
| WBRNAi00043728 | Inferred_automatically | RNAi_primary | ||||
| WBRNAi00030527 | Inferred_automatically | RNAi_primary | ||||
| Expr_pattern | Expr1015243 | |||||
| Expr1147714 | ||||||
| Expr2002184 | ||||||
| Expr2020405 | ||||||
| Drives_construct | WBCnstr00032926 | |||||
| Construct_product | WBCnstr00032926 | |||||
| Microarray_results (19) | ||||||
| Expression_cluster (217) | ||||||
| Interaction | WBInteraction000541045 | |||||
| Map_info | Positive | Positive_clone | F01D5 | Inferred_automatically | From sequence, transcript, pseudogene data | |
| Interpolated_map_position | II | 22.0376 | ||||
| Method | Gene |
