WormBase Tree Display for Gene: WBGene00008459

WBGene00008459 SMap: S_parent: Sequence: E02H1
  Identity: Version: 2
    Name: CGC_name: mrpl-53 Person_evidence: WBPerson261
      Sequence_name: E02H1.8
      Molecular_name: E02H1.8
        E02H1.8.1
        CE34789
      Other_name: CELE_E02H1.8 Accession_evidence: NDB BX284602
      Public_name: mrpl-53
    DB_info: Database: AceView gene 2J889
        WormQTL gene WBGene00008459
        WormFlux gene WBGene00008459
        NDB locus_tag CELE_E02H1.8
        Panther gene CAEEL|WormBase=WBGene00008459|UniProtKB=Q7YX52
          family PTHR33618
        NCBI gene 3565796
        RefSeq protein NM_001026887.4
        TREEFAM TREEFAM_ID TF300292
        TrEMBL UniProtAcc Q7YX52
        UniProt_GCRP UniProtAcc Q7YX52
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 10 Jun 2011 16:50:10 WBPerson2970 Name_change: CGC_name: mrpl-53
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: mrpl
    Allele (15)
    RNASeq_FPKM (74)
    GO_annotation: 00082826
      00082827
    Contained_in_operon: CEOP2436
    Ortholog: WBGene00024260 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00144997 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00132215 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00078330 Caenorhabditis remanei From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00223362 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g6151 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g9060 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g2161 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g191 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g1102 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP29.g1104 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g3054 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g1506 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3535 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g15636 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g15942 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g3222 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-mrpl-53 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold50.g309 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      FL83_08450 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_003701 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02647 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g18686 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20190400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g5540 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00248057 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00259880 Strongyloides ratti From_analysis: WormBase-Compara
      FB:FBgn0050481 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040912-93 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
      HGNC:16684 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      MGI:1915749 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      RGD:1306709 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
    Paralog: WBGene00021920
    Structured_description: Automated_description: Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is an ortholog of human MRPL53 (mitochondrial ribosomal protein L53). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: E02H1.8
    Corresponding_transcript: E02H1.8.1
    Other_sequence (23)
    Associated_feature: WBsf221908
  Experimental_info: RNAi_result: WBRNAi00007974 Inferred_automatically: RNAi_primary
      WBRNAi00012646 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1028418
      Expr1033685
      Expr1147594
      Expr2013729
      Expr2031964
    Drives_construct: WBCnstr00032948
    Construct_product: WBCnstr00032948
    Microarray_results (14)
    Expression_cluster (81)
    Interaction: WBInteraction000541548
      WBInteraction000556463
  Map_info: Map: II Position: 1.61607 Error: 4e-05
    Positive: Positive_clone: E02H1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00065394
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene