WormBase Tree Display for Gene: WBGene00008439
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| WBGene00008439 | SMap | S_parent | Sequence | DY3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | mfb-1 | Paper_evidence | WBPaper00024548 | |||||
| Sequence_name | DY3.6 | ||||||||
| Molecular_name | DY3.6 | ||||||||
| DY3.6.1 | |||||||||
| CE15750 | |||||||||
| Other_name | tag-220 | Curator_confirmed | WBPerson2970 | ||||||
| CELE_DY3.6 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | mfb-1 | ||||||||
| DB_info | Database | AceView | gene | 1J356 | |||||
| WormQTL | gene | WBGene00008439 | |||||||
| WormFlux | gene | WBGene00008439 | |||||||
| NDB | locus_tag | CELE_DY3.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008439|UniProtKB=O45323 | |||||||
| family | PTHR13123 | ||||||||
| NCBI | gene | 183975 | |||||||
| RefSeq | protein | NM_059975.5 | |||||||
| TREEFAM | TREEFAM_ID | TF313070 | |||||||
| TrEMBL | UniProtAcc | O45323 | |||||||
| UniProt_GCRP | UniProtAcc | O45323 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 22 Dec 2004 08:53:54 | WBPerson2970 | Name_change | CGC_name | mfb-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mfb | ||||||||
| Allele (70) | |||||||||
| Strain | WBStrain00002459 | ||||||||
| WBStrain00002900 | |||||||||
| WBStrain00035998 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00034241 | ||||||||
| 00034242 | |||||||||
| 00034243 | |||||||||
| 00034244 | |||||||||
| 00034245 | |||||||||
| 00034246 | |||||||||
| Ortholog (40) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in protein ubiquitination. Predicted to be located in cytoplasm and nucleus. Predicted to be part of SCF ubiquitin ligase complex. Expressed in several structures, including head; hypodermal cell; tail; touch receptor neurons; and ventral nerve cord. Human ortholog(s) of this gene implicated in primary pulmonary hypertension. Is an ortholog of human FBXO25 (F-box protein 25) and FBXO32 (F-box protein 32). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:14557 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16731) | ||||
| Molecular_info | Corresponding_CDS | DY3.6 | |||||||
| Corresponding_transcript | DY3.6.1 | ||||||||
| Other_sequence | FC811313.1 | ||||||||
| GR11040 | |||||||||
| Oden_isotig08239 | |||||||||
| BXC01369_1 | |||||||||
| NAC00925_1 | |||||||||
| ES272999.1 | |||||||||
| Acan_isotig05983 | |||||||||
| AI366635.1 | |||||||||
| EX566721.1 | |||||||||
| ACC04123_1 | |||||||||
| AYC02909_1 | |||||||||
| EY468139.1 | |||||||||
| DAC02290_1 | |||||||||
| TSC06799_1 | |||||||||
| GR979119.1 | |||||||||
| ASC00939_2 | |||||||||
| EX564865.1 | |||||||||
| EW743599.1 | |||||||||
| PT02586 | |||||||||
| SSC05884_1 | |||||||||
| Tcol_isotig05487 | |||||||||
| MI01826 | |||||||||
| BU089314.1 | |||||||||
| Tcol_isotig05484 | |||||||||
| AE00691 | |||||||||
| Dviv_isotig14444 | |||||||||
| AF052047.1 | |||||||||
| SR02481 | |||||||||
| FC816821.1 | |||||||||
| PT02686 | |||||||||
| EX546128.1 | |||||||||
| FC817731.1 | |||||||||
| Oden_isotig13044 | |||||||||
| BU088239.1 | |||||||||
| Tcir_isotig07203 | |||||||||
| EX563163.1 | |||||||||
| CR06175 | |||||||||
| PPC07447_1 | |||||||||
| GRC04639_1 | |||||||||
| AYC04072_1 | |||||||||
| EY462994.1 | |||||||||
| EX551203.1 | |||||||||
| XI04028 | |||||||||
| EW742486.1 | |||||||||
| ES584521.1 | |||||||||
| SSC00243_1 | |||||||||
| FC545748.1 | |||||||||
| GR977985.1 | |||||||||
| CB038991.1 | |||||||||
| JI170837.1 | |||||||||
| XIC01989_1 | |||||||||
| MIC02198_1 | |||||||||
| BU089293.1 | |||||||||
| EX545192.1 | |||||||||
| Dviv_isotig14445 | |||||||||
| Oden_isotig13043 | |||||||||
| Tcol_isotig15442 | |||||||||
| ACC37737_1 | |||||||||
| EX550925.1 | |||||||||
| DA03266 | |||||||||
| EX502051.1 | |||||||||
| FC540779.1 | |||||||||
| FC549667.1 | |||||||||
| AE03739 | |||||||||
| RSC01496_1 | |||||||||
| FC549659.1 | |||||||||
| SC00088 | |||||||||
| Dviv_isotig24710 | |||||||||
| FC540953.1 | |||||||||
| AE00966 | |||||||||
| Oden_isotig28205 | |||||||||
| BXC05940_1 | |||||||||
| ES567638.1 | |||||||||
| SS01472 | |||||||||
| Name_isotig08865 | |||||||||
| Tcol_isotig05486 | |||||||||
| ES565387.1 | |||||||||
| MI04473 | |||||||||
| Tcir_isotig23075 | |||||||||
| BXC06166_1 | |||||||||
| TDC00573_1 | |||||||||
| GR11039 | |||||||||
| EW744504.1 | |||||||||
| BUC00928_1 | |||||||||
| Tcol_isotig05485 | |||||||||
| CJC03336_1 | |||||||||
| CRC02620_1 | |||||||||
| PTC02109_1 | |||||||||
| CJC11036_1 | |||||||||
| EL889079.1 | |||||||||
| AS00862 | |||||||||
| EX544898.1 | |||||||||
| EX546370.1 | |||||||||
| Acan_isotig05982 | |||||||||
| Dviv_isotig14443 | |||||||||
| EX539131.1 | |||||||||
| PVC02398_1 | |||||||||
| ACC01412_1 | |||||||||
| SRC01998_1 | |||||||||
| Associated_feature | WBsf649419 | ||||||||
| WBsf984505 | |||||||||
| WBsf984506 | |||||||||
| WBsf1010275 | |||||||||
| WBsf219983 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00060999 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00116913 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030444 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00060998 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113747 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00060997 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043553 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061000 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113743 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (12) | |||||||||
| Drives_construct | WBCnstr00003056 | ||||||||
| WBCnstr00004524 | |||||||||
| WBCnstr00011153 | |||||||||
| WBCnstr00020326 | |||||||||
| Construct_product | WBCnstr00011153 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (239) | |||||||||
| Interaction (18) | |||||||||
| Map_info | Map | I | Position | 3.11369 | Error | 0.005753 | |||
| Positive | Positive_clone | DY3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4889 | |||||||
| 4741 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00012854 | ||||||||
| WBPaper00024548 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00043086 | |||||||||
| WBPaper00046423 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
