WormBase Tree Display for Gene: WBGene00008380
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| WBGene00008380 | SMap | S_parent | Sequence | D1054 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | prp-38 | Person_evidence | WBPerson4055 | |||||
| Sequence_name | D1054.14 | ||||||||
| Molecular_name | D1054.14 | ||||||||
| D1054.14.1 | |||||||||
| CE05532 | |||||||||
| Other_name | CELE_D1054.14 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | prp-38 | ||||||||
| DB_info | Database | AceView | gene | 5L286 | |||||
| WormQTL | gene | WBGene00008380 | |||||||
| WormFlux | gene | WBGene00008380 | |||||||
| NDB | locus_tag | CELE_D1054.14 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008380|UniProtKB=Q18942 | |||||||
| family | PTHR23142 | ||||||||
| NCBI | gene | 179499 | |||||||
| RefSeq | protein | NM_073361.6 | |||||||
| TREEFAM | TREEFAM_ID | TF105910 | |||||||
| TrEMBL | UniProtAcc | Q18942 | |||||||
| UniProt_GCRP | UniProtAcc | Q18942 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 13 Apr 2012 16:18:10 | WBPerson2970 | Name_change | CGC_name | prp-38 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | prp | ||||||||
| Allele (19) | |||||||||
| Strain | WBStrain00051217 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00062909 | ||||||||
| 00062910 | |||||||||
| 00062911 | |||||||||
| 00062912 | |||||||||
| 00062913 | |||||||||
| 00062914 | |||||||||
| 00062915 | |||||||||
| 00062916 | |||||||||
| 00062917 | |||||||||
| Contained_in_operon | CEOP5264 | ||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00022434 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of precatalytic spliceosome. Is an ortholog of human PRPF38A (pre-mRNA processing factor 38A). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | D1054.14 | |||||||
| Corresponding_transcript | D1054.14.1 | ||||||||
| Other_sequence (50) | |||||||||
| Associated_feature | WBsf234447 | ||||||||
| Experimental_info | RNAi_result (18) | ||||||||
| Expr_pattern | Expr1023804 | ||||||||
| Expr1033631 | |||||||||
| Expr1147376 | |||||||||
| Expr2015112 | |||||||||
| Expr2033350 | |||||||||
| Drives_construct | WBCnstr00033011 | ||||||||
| Construct_product | WBCnstr00033011 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (114) | |||||||||
| Interaction (22) | |||||||||
| Map_info | Map | V | Position | 2.81079 | |||||
| Positive | Positive_clone | D1054 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029254 | ||||||||
| WBPaper00032502 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040897 | |||||||||
| WBPaper00041328 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064758 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
