WormBase Tree Display for Gene: WBGene00008379
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| WBGene00008379 | SMap | S_parent | Sequence | D1054 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | secs-1 | Person_evidence | WBPerson5890 | |||||
| Sequence_name | D1054.13 | ||||||||
| Molecular_name | D1054.13a | ||||||||
| D1054.13a.1 | |||||||||
| CE05531 | |||||||||
| D1054.13b | |||||||||
| CE43036 | |||||||||
| D1054.13b.1 | |||||||||
| Other_name | CELE_D1054.13 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | secs-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 23 Feb 2007 15:37:00 | WBPerson2970 | Name_change | CGC_name | secs-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | secs | ||||||||
| Allele (37) | |||||||||
| Strain | WBStrain00032849 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Contained_in_operon | CEOP5264 | ||||||||
| Ortholog (35) | |||||||||
| Structured_description | Automated_description | Enables identical protein binding activity. Predicted to be involved in selenocysteine incorporation. Predicted to be located in cytoplasm. Expressed in head neurons and ventral nerve cord. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 2D. Is an ortholog of human SEPSECS (Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060270 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:30605) | ||||
| Molecular_info | Corresponding_CDS | D1054.13a | |||||||
| D1054.13b | |||||||||
| Corresponding_transcript | D1054.13a.1 | ||||||||
| D1054.13b.1 | |||||||||
| Other_sequence (34) | |||||||||
| Associated_feature | WBsf234446 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00066640 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00012532 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030343 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043388 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7490 | ||||||||
| Expr1019592 | |||||||||
| Expr1033630 | |||||||||
| Expr1147375 | |||||||||
| Expr2015722 | |||||||||
| Expr2033954 | |||||||||
| Drives_construct | WBCnstr00012635 | ||||||||
| WBCnstr00033012 | |||||||||
| Construct_product | WBCnstr00033012 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (94) | |||||||||
| Interaction (36) | |||||||||
| Map_info | Map | V | Position | 2.80378 | Error | 0.005473 | |||
| Positive | Positive_clone | D1054 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
