WormBase Tree Display for Gene: WBGene00008314
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| WBGene00008314 | SMap | S_parent | Sequence | C54G4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C54G4.4 | |||||||
| Molecular_name | C54G4.4 | ||||||||
| C54G4.4.1 | |||||||||
| CE15735 | |||||||||
| Other_name | CELE_C54G4.4 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | C54G4.4 | ||||||||
| DB_info | Database | AceView | gene | 1I574 | |||||
| WormQTL | gene | WBGene00008314 | |||||||
| WormFlux | gene | WBGene00008314 | |||||||
| NDB | locus_tag | CELE_C54G4.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008314|UniProtKB=Q18849 | |||||||
| family | PTHR19325 | ||||||||
| NCBI | gene | 172579 | |||||||
| RefSeq | protein | NM_059800.5 | |||||||
| TREEFAM | TREEFAM_ID | TF318282 | |||||||
| TrEMBL | UniProtAcc | Q18849 | |||||||
| UniProt_GCRP | UniProtAcc | Q18849 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (86) | |||||||||
| Strain | WBStrain00032390 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00062583 | ||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00002976 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00009500 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABalaapppa; ABalapaaaa; RIA; arcade cell; and pharynx based on microarray and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on RNA-seq and microarray studies. Is affected by sixteen chemicals including stavudine; Zidovudine; and Sodium Chloride based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Galactose-binding-like domain superfamily; C-type lectin fold; Sushi repeat (SCR repeat); Sushi/SCR/CCP domain; Sushi/SCR/CCP superfamily; C-type lectin-like/link domain superfamily; and C-type lectin-like. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C54G4.4 | |||||||
| Corresponding_transcript | C54G4.4.1 | ||||||||
| Other_sequence | Dviv_isotig17321 | ||||||||
| Acan_isotig15017 | |||||||||
| Dviv_isotig17322 | |||||||||
| Associated_feature | WBsf664506 | ||||||||
| WBsf717531 | |||||||||
| WBsf984326 | |||||||||
| WBsf984327 | |||||||||
| WBsf1010177 | |||||||||
| WBsf219852 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00043179 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00003229 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1018844 | ||||||||
| Expr1033602 | |||||||||
| Expr1147157 | |||||||||
| Expr2001934 | |||||||||
| Expr2020157 | |||||||||
| Drives_construct | WBCnstr00033064 | ||||||||
| Construct_product | WBCnstr00033064 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (168) | |||||||||
| Interaction | WBInteraction000115552 | ||||||||
| WBInteraction000137036 | |||||||||
| WBInteraction000230353 | |||||||||
| WBInteraction000277961 | |||||||||
| WBInteraction000402017 | |||||||||
| Map_info | Positive | Positive_clone | C54G4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | I | 2.41858 | |||||||
| Reference | WBPaper00031686 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00047766 | |||||||||
| WBPaper00051219 | |||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
