WormBase Tree Display for Gene: WBGene00008149
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| WBGene00008149 | SMap | S_parent | Sequence | C47E12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pyp-1 | Person_evidence | WBPerson756 | |||||
| WBPerson268 | |||||||||
| Sequence_name | C47E12.4 | ||||||||
| Molecular_name | C47E12.4a | ||||||||
| C47E12.4a.1 | |||||||||
| CE33767 | |||||||||
| C47E12.4c | |||||||||
| CE48296 | |||||||||
| C47E12.4d | |||||||||
| CE05448 | |||||||||
| C47E12.4c.1 | |||||||||
| C47E12.4d.1 | |||||||||
| Other_name | CELE_C47E12.4 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | pyp-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 09 Sep 2005 11:08:45 | WBPerson2970 | Name_change | CGC_name | pyp-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pyp | ||||||||
| Allele (38) | |||||||||
| Strain | WBStrain00027494 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Contained_in_operon | CEOP4348 | ||||||||
| Ortholog (49) | |||||||||
| Structured_description | Concise_description | pyp-1 encodes, by alternative splicing, three isoforms of an inorganic pyrophosphatase required for embryonic and larval viability, intestinal function, and distal tip cell migration; PYP-1 is catalytically active in vitro, and is expressed in neurons, intestine, and coelomocytes; PYP-1 is orthologous to Drosophila NURF-38, and to human PPA1 (OMIM:179030) and PPA2; by orthology with NURF-38, PYP-1 is also predicted to participate in nucleosome remodelling. | Paper_evidence | WBPaper00027681 | |||||
| WBPaper00028783 | |||||||||
| WBPaper00031169 | |||||||||
| WBPaper00031236 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 26 Nov 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable inorganic diphosphate phosphatase activity. Involved in innate immune response. Located in neuron projection and vacuole. Expressed in coelomocyte and neurons. Is an ortholog of human PPA1 (inorganic pyrophosphatase 1) and PPA2 (inorganic pyrophosphatase 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C47E12.4a | |||||||
| C47E12.4c | |||||||||
| C47E12.4d | |||||||||
| Corresponding_CDS_history | C47E12.4:wp99 | ||||||||
| C47E12.4b:wp236 | |||||||||
| C47E12.4b:wp261 | |||||||||
| C47E12.4c:wp236 | |||||||||
| Corresponding_transcript | C47E12.4a.1 | ||||||||
| C47E12.4c.1 | |||||||||
| C47E12.4d.1 | |||||||||
| Other_sequence (133) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result (19) | ||||||||
| Expr_pattern | Expr7807 | ||||||||
| Expr1020480 | |||||||||
| Expr1033540 | |||||||||
| Expr1146667 | |||||||||
| Expr2015205 | |||||||||
| Expr2033439 | |||||||||
| Drives_construct | WBCnstr00012939 | ||||||||
| WBCnstr00033204 | |||||||||
| Construct_product | WBCnstr00012939 | ||||||||
| WBCnstr00033204 | |||||||||
| Antibody | WBAntibody00001321 | ||||||||
| Microarray_results (41) | |||||||||
| Expression_cluster (145) | |||||||||
| Interaction (81) | |||||||||
| Map_info | Map | IV | Position | 4.46234 | Error | 0.00085 | |||
| Positive | Positive_clone | C47E12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (17) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
