WormBase Tree Display for Gene: WBGene00008114
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| WBGene00008114 | SMap | S_parent | Sequence | C46C2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C46C2.6 | |||||||
| Molecular_name | C46C2.6a | ||||||||
| C46C2.6a.1 | |||||||||
| CE34757 | |||||||||
| C46C2.6b | |||||||||
| CE40027 | |||||||||
| C46C2.6c | |||||||||
| CE46613 | |||||||||
| C46C2.6b.1 | |||||||||
| C46C2.6c.1 | |||||||||
| Other_name | CELE_C46C2.6 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | C46C2.6 | ||||||||
| DB_info | Database | AceView | gene | 4J977 | |||||
| WormQTL | gene | WBGene00008114 | |||||||
| WormFlux | gene | WBGene00008114 | |||||||
| NDB | locus_tag | CELE_C46C2.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008114|UniProtKB=Q7YTQ5 | |||||||
| family | PTHR35180 | ||||||||
| NCBI | gene | 3565282 | |||||||
| RefSeq | protein | NM_001047461.1 | |||||||
| NM_001268449.1 | |||||||||
| NM_001047460.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF321183 | |||||||
| TrEMBL | UniProtAcc | H2L287 | |||||||
| Q7YTQ5 | |||||||||
| Q1NZ28 | |||||||||
| UniProt_GCRP | UniProtAcc | Q7YTQ5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (28) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (21) | |||||||||
| Paralog | WBGene00010667 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00050880 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Enriched in several structures, including AVH; G2; body wall muscle cell from C lineage; germ line; and touch receptor neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-12; rrf-3; and eat-2 based on tiling array; RNA-seq; and microarray studies. Is affected by six chemicals including Tunicamycin; Psoralens; and allantoin based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C46C2.6a | |||||||
| C46C2.6b | |||||||||
| C46C2.6c | |||||||||
| Corresponding_transcript | C46C2.6a.1 | ||||||||
| C46C2.6b.1 | |||||||||
| C46C2.6c.1 | |||||||||
| Other_sequence | Dviv_isotig08286 | ||||||||
| Dviv_isotig08287 | |||||||||
| Dviv_isotig08285 | |||||||||
| Experimental_info | Expr_pattern | Expr1014756 | |||||||
| Expr1146574 | |||||||||
| Expr2001679 | |||||||||
| Expr2019907 | |||||||||
| Drives_construct | WBCnstr00033226 | ||||||||
| Construct_product | WBCnstr00033226 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (45) | |||||||||
| SAGE_tag | SAGE:cagttccatc | Strand | Antisense | ||||||
| SAGE:aaatttgatt | Strand | Antisense | |||||||
| SAGE:ttcacaacaa | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:tggatatata | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ttcacaacaacaattat | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gtttgaaaga | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Map_info | Positive | Positive_clone | C46C2 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | 4.11013 | |||||||
| Method | Gene |
