WormBase Tree Display for Gene: WBGene00008062
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| WBGene00008062 | SMap | S_parent | Sequence | C41G7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | set-32 | Person_evidence | WBPerson1730 | |||||
| WBPerson268 | |||||||||
| WBPerson632 | |||||||||
| Sequence_name | C41G7.4 | ||||||||
| Molecular_name | C41G7.4 | ||||||||
| C41G7.4.1 | |||||||||
| CE42716 | |||||||||
| Other_name | tag-328 | Paper_evidence | |||||||
| Person_evidence | WBPerson201 | ||||||||
| CELE_C41G7.4 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | set-32 | ||||||||
| DB_info | Database | AceView | gene | 1K97 | |||||
| WormQTL | gene | WBGene00008062 | |||||||
| WormFlux | gene | WBGene00008062 | |||||||
| NDB | locus_tag | CELE_C41G7.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008062|UniProtKB=Q93368 | |||||||
| family | PTHR47250 | ||||||||
| NCBI | gene | 183391 | |||||||
| RefSeq | protein | NM_060128.3 | |||||||
| TREEFAM | TREEFAM_ID | TF321419 | |||||||
| TrEMBL | UniProtAcc | Q93368 | |||||||
| UniProt_GCRP | UniProtAcc | Q93368 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-32 | ||||
| Other_name | tag-328 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | set | ||||||||
| Allele (42) | |||||||||
| Strain | WBStrain00036209 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (53) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Concise_description | set-32 encodes a divergent histone H3 lysine-9 (H3K9) methyltransferase homolog with a SET domain; SET-32 has no obvious non-nematode orthologs, but several paralogs (SET-6, SET-13, SET-15, SET-19, SET-20, and SET-21); set-32(ok1457) has no obvious mutant phenotype, and SET-32 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00030864 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 11 Oct 2007 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including Z1.p; germ line; germline precursor cell; head mesodermal cell; and male distal tip cell based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; glp-1; and eat-2 based on microarray and RNA-seq studies. Is affected by thirteen chemicals including manganese chloride; Alovudine; and stavudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SET domain superfamily and SET domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C41G7.4 | |||||||
| Corresponding_CDS_history | C41G7.4:wp191 | ||||||||
| Corresponding_transcript | C41G7.4.1 | ||||||||
| Other_sequence | CBC11117_1 | ||||||||
| Associated_feature | WBsf218298 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00091522 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00115387 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042318 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029735 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062516 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14250 | ||||||||
| Expr14373 | |||||||||
| Expr16244 | |||||||||
| Expr16245 | |||||||||
| Expr1012882 | |||||||||
| Expr1033500 | |||||||||
| Expr1146307 | |||||||||
| Expr2015777 | |||||||||
| Expr2034010 | |||||||||
| Drives_construct | WBCnstr00033266 | ||||||||
| WBCnstr00042858 | |||||||||
| Construct_product | WBCnstr00033266 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (119) | |||||||||
| Interaction | WBInteraction000238787 | ||||||||
| WBInteraction000290578 | |||||||||
| WBInteraction000313800 | |||||||||
| WBInteraction000359288 | |||||||||
| WBInteraction000473842 | |||||||||
| WBInteraction000521420 | |||||||||
| Map_info | Map | I | Position | 3.78782 | Error | 0.001312 | |||
| Positive | Positive_clone | C41G7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5155 | |||||||
| 4148 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (29) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
